BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67200.1
Length=2189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496879 jgi|Araly1|496879|fgenesh2_kg.8__2695__AT5G67200.1 3297 0.0
> Ahg496879 jgi|Araly1|496879|fgenesh2_kg.8__2695__AT5G67200.1
Length=2172
Score = 3297 bits (1785), Expect = 0.0
Identities = 2057/2187 (94%), Gaps = 23/2187 (1%)
Strand=Plus/Plus
Query 4 aaaaaaaaaTGACACTGAActtttttcttcccttcttcttcttcttcattctCCTCCGTG 63
|||||||||||||||||||| || || |||||| |||||||||| ||||||||||
Sbjct 1 AAAAAAAAATGACACTGAAC----TT-TT---TTCTTC-TCTTCTTCATCCTCCTCCGTG 51
Query 64 TCTCCGCCGGAGCAGAGCCAAATTACTTCAACTCCTTACTTCCTTCCGACGCCGTTGCAT 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 52 TCTCCGCCGGAGCAGAGCCAAATTACTTCAACTCCTTACTTCCTTCCGACGCTGTTGCTT 111
Query 124 TACTCTCTTTCAAATCCACCGCCGATCTCGACAACAAGCTCTTGTATTCACTCACCGAGC 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 TACTCTCTTTCAAATCCACCGCCGATCTCGACAACAAGCTCTTGTATTCACTCACCGAGC 171
Query 184 GTTACGACTACTGTCAATGGCGCGGCGTTAAATGTGCACAAGGACGCATCGTTCGTCTTG 243
|||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||
Sbjct 172 GTTACGACTACTGTCAATGGCGCGGCGTCAAATGTGCTCAAGGTCGTATCGTTCGTCTTG 231
Query 244 TTCTCTCCGGCGTTGGTCTCCGCGGCTACTTCTCTTCAGCTACTCTTAGCCGTCTTGACC 303
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 232 TTCTCTCCGGCGTTGGTCTCCGTGGCTACTTCTCTTCGGCGACTCTTAGCCGTCTTGACC 291
Query 304 AGCTCCGAGTTCTGAGTCTCGAGAATAACTCGCTCTTTGGTCCGATTCCTGATCTTTCAC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGCTCCGAGTTCTGAGTCTCGAGAATAACTCGCTCTTTGGTCCGATTCCTGATCTTTCAC 351
Query 364 ATCTCGTTAACCTCAAATCTCTCTTCCTTAGCCGGAATCAGTTTTCCGGTGCTTTCCCTC 423
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 352 ATCTCGTTAACCTCAAATCTCTCTTCCTTAGCCGAAATGAGTTTTCCGGTGCTTTCCCTC 411
Query 424 CGTCGATTCTCTCTCTGCACCGGTTAATGATTCTCTCTATATCCCACAACAACTTCTCCG 483
|||||||||||||||| |||||||||||||||||||| | || | |||||||||||||
Sbjct 412 CGTCGATTCTCTCTCTTCACCGGTTAATGATTCTCTCCCTCTCTCGTAACAACTTCTCCG 471
Query 484 GTTCGATTCCCTCTGAGATCAACGCACTTGACCGGTTAACTTCATTAAATCTCGACTTTA 543
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 472 GTTCGATTCCGTCTGAGATCAACGCTCTTGACCGGTTAACTTCATTGAATCTCGAGTTCA 531
Query 544 ACCGGTTTAACGGAACTCTACCGTCGTTAAACCAGTCGTTTCTGACGTCATTCAACGTCT 603
||||||||||||||||||| ||| ||||||| ||||||||||||||||| || ||||| |
Sbjct 532 ACCGGTTTAACGGAACTCTCCCGCCGTTAAATCAGTCGTTTCTGACGTCTTTTAACGTTT 591
Query 604 CCGGTAACAACCTCACCGGAGTAATCCCCGTTACTCCGACTCTATCACGTTTCGATGCGT 663
|||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct 592 CCGGTAACAATCTCACCGGGGTTATCCCCGTTACACCGACTCTATCACGATTCGATGCGT 651
Query 664 CGTCGTTTAGGTCTAACCCTGGACTCTGCGGCGAGATCATTAACCGAGCTTGCGCTTCAC 723
||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 652 CGTCGTTTAAGTCTAACCCTGGACTCTGCGGTGAGATCATAAACAGAGCTTGCGCTTCAC 711
Query 724 GCTCGCCGTTCTTTGGCTCCACTAACAAAACGACGTCGTCAGAAGCTCCGTTAGGACAAA 783
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 712 GCTCGCCGTTCTTTGGTTCCACTAACAAAACGACGTCGTCAGAACCTCCGTTAGGACAAA 771
Query 784 GCGCACAGGCGCAGAATGGTGGTGCGGTGGTTATCCCTCCGGTAGTTACGAAGAAGAAAG 843
|||| ||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 772 GCGCTCAGGCGCAGAACGGTGGTGCGGTGATTATTTCTCCGGTGGTTACGAAGAAGAAAG 831
Query 844 GTAAAGAAAGTGGATTAGTCCTTGGTTTCACCGCTGGTCTCGCTTCGCTTATAGTTCTTG 903
||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 832 GTAAAGAGAGTGGATTAGTTCTTGGTTCCACCGCTGGTCTCGCTTCGCTTATTGTTCTTG 891
Query 904 GTCTTTGCCTCGTTGTGTTCTCTCTGGTGATAAAGAAACGAAACGACGATGGAATATATG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 892 GTCTTTGCCTCGTTGTGTTCTCTCTGGTGATAAAGAAACGAAACGACGATGGAATCTATG 951
Query 964 AACCAAATCCAAAAGGAGAAGCTTCCTTAT--C-TCAACAACAGCAATCACAAAACCAAA 1020
||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||||
Sbjct 952 AACCAAATCCAAAAGGAGAAGCTTCTTTATCACAACAACAACAACAATCACAAAACCAAA 1011
Query 1021 CTCCAAGAACAAGAGCAGTTCCGGTTTTGAACTCAGATACCGAATCTCA-AAAGCGAGAA 1079
|||||||||||||| | ||||| |||||||| |||||| |||||||||| ||| ||||||
Sbjct 1012 CTCCAAGAACAAGAACTGTTCCAGTTTTGAATTCAGATTCCGAATCTCATAAA-CGAGAA 1070
Query 1080 AAAGAGGTTCAATTTCAAGAAACAGAGCAGCGAATACCAAATAGTGGGAATCTT-GTTTT 1138
||||| ||||| ||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1071 AAAGATGTTCAGTTTCAAGAAACAGAGCAGCGAATACCAAATAGTGGGAAT-TTAGTATT 1129
Query 1139 CTGTGGAGAATCTAGAAGTCAAGGAATGTACACAATGGAGCAGCTAATGAGAGCTTCAGC 1198
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1130 CTGCGGAGAATCAAGAAGTCAAGGAATGTACACAATGGAGCAGCTAATGAGAGCTTCGGC 1189
Query 1199 GGAGTTATTAGGAAGAGGATCAGTAGGGATTACGTATAAAGCGGTTCTTGATAATCAGCT 1258
||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1190 GGAGTTATTGGGAAGAGGATCAGTGGGGATTATGTATAAGGCGGTTCTTGATAATCAGCT 1249
Query 1259 TATTGTGACGGTGAAGAGACTAGACGCTGCTAAAACGGCAGTGACGAGTGAAGAAGCGTT 1318
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1250 TATTGTGACAGTGAAGAGACTAGACGCGGCTAAAACGGCGGTGACGAGTGAAGAAGCGTT 1309
Query 1319 TGAGAATCATATGGAGATTGTTGGTGGACTTAGACATACCAATCTTGTTCCGATTAGATC 1378
|||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |
Sbjct 1310 TGAGAATCATATGGAGATTGTTGGTGGACTTAGACACACCAATCTTGTCCCCATTAGAGC 1369
Query 1379 TTATTTTCAGTCCAACGGAGAGAGACTTATCATCTACGATTATCATCCTAATGGCAGCTT 1438
||| ||||| || |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 1370 TTACTTTCAATCAAACGGAGAGAGACTCATTATCTATGATTATCATCCTAATGGTAGCTT 1429
Query 1439 ATTCAATCTCATTCACGGTTCAAGATCGTCAAGAGCAAAGCCATTACATTGGACATCATG 1498
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1430 ATTCAATCTCATTCACGGTTCAAGATCTTCAAGAGCAAAGCCATTACATTGGACATCATG 1489
Query 1499 TTTAAAGATTGCAGAAGATGTAGCTCAAGGCTTATATTACATCCACCAAACATCATCAGC 1558
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1490 TTTAAAGATTGCAGAAGATGTAGCTCAAGGCTTATATTACATACACCAAACATCATCAGC 1549
Query 1559 ATTAGTCCATGGAAACCTAAAATCCACAAACATTCTCTTAGGACAAGACTTTGAAGCCTG 1618
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1550 ATTAGTCCATGGAAACCTAAAATCCACAAACATCCTCTTAGGACAAGACTTTGAAGCCTG 1609
Query 1619 TTTAACAGATTACTGCCTCAGTGTCTTAACAGACTCTTCTTCTGCTTCACCTGATGATCC 1678
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1610 TTTAACAGATTACTGCCTCAGTGTCTTAACAGACTCTTCATCTGCTTCACCTGATGATCC 1669
Query 1679 TGACTCATCCTCCTACAAAGCTCCTGAGATCAGAAAATCATCACGTAGACCAACTTCCAA 1738
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 TGACTCATCTTCCTACAAAGCTCCTGAGATCAGAAAATCATCACGTAGACCAACTTCCAA 1729
Query 1739 ATGTGATGTTTACTCGTTTGGTGTCTTGATCTTTGAGCTTTTGACTGGTAAGAATGCGTC 1798
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1730 ATGTGATGTTTATTCGTTTGGTGTCTTGATCTTTGAGCTTTTGACTGGTAAGAATGCATC 1789
Query 1799 AAGGCATCCGTTTATGGCGCCTCATGATATGCTTGATTGGGTTAGAGCAATGAGAGAAGA 1858
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GAGGCATCCGTTTATGGCGCCTCATGATATGCTTGATTGGGTTAGAGCAATGAGAGAAGA 1849
Query 1859 AGAAGAAGGAACAGAGGATAATAGGCTTGGGATGATGACTGAAACAGCTTGTCTTTGCCG 1918
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1850 AGAAGAAGGAACGGAGGATAATAGGCTGGGGATGATGACTGAAACAGCTTGTCTTTGCCG 1909
Query 1919 TGTGACATCACCAGAGCAAAGACCAACGATGAGACAAGTGATTAAGATGATTCAGGAGAT 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 TGTGACATCACCAGAGCAAAGACCAACGATGAGACAAGTGATTAAGATGATTCAGGAGAT 1969
Query 1979 TAAGGAGAGTGTTATGGCTGAAGAAAACGATCCGTTCCGGTGAAAACGAAACTTCCTAGC 2038
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct 1970 TAAGGAGAGTGTTATGGCTGAAGAGAACGATCCGTTCCGGTGAAAACAAAACTTCGTAGG 2029
Query 2039 TATCCTCCGAACAATTTTCCCAAGCGAGGGGGTTAATTTAGAGAAAGGAGAATATAGGGT 2098
||||||||||||||||||| |||| |||||||||| |||||| ||| ||||||||||| |
Sbjct 2030 TATCCTCCGAACAATTTTCTCAAGGGAGGGGGTTATTTTAGA-AAATGAGAATATAGG-T 2087
Query 2099 GCGTGAA-TGTAATTTTGTTAGCATGTGGGGTTGGAATTGTAATAC-AGTTGGAATTTAG 2156
|||| || |||||| || |||| ||||||||| ||||||||||||| | |||||||||||
Sbjct 2088 GCGTAAAATGTAATATTCTTAGGATGTGGGGTCGGAATTGTAATACCA-TTGGAATTTAG 2146
Query 2157 AGGAC-GAAAGTCAAAGAAGTTTGCTT 2182
||||| ||| |||||||||||||||||
Sbjct 2147 AGGACTGAA-GTCAAAGAAGTTTGCTT 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82389199935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5