BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67210.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496878 jgi|Araly1|496878|fgenesh2_kg.8__2694__AT5G67210.1 1855 0.0
> Ahg496878 jgi|Araly1|496878|fgenesh2_kg.8__2694__AT5G67210.1
Length=1199
Score = 1855 bits (1004), Expect = 0.0
Identities = 1142/1207 (95%), Gaps = 15/1207 (1%)
Strand=Plus/Plus
Query 4 TTTGTTTTT-AAAACAGAGTCATCCTCTTCGTCTTCTTTCTCTGACCAAAACAGAGCGAA 62
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 TTTGTTTTTAAAAACAGAGTCATCCTCTTCGTCTTATTTCTCTGACCAAAACAGAG-G-- 57
Query 63 AAGCAAAAATGAAAAGTGGAGGGAACACAAACACTAAACTCATACTTGTTCATCCATACA 122
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 58 AAGCAAAAATGAAAAGTGGAGGGAACACAAACACGAAGCTCATACTTGTTCATCCATACA 117
Query 123 TTCAAAAGCAAACAAGCACAAATCGTCTATGGCTTCTCGCTTTCGTTTCTTTCTTCACAA 182
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 118 TTCAAAAACAAACAAGCACAAATCGTCTATGGCTTCTCGCTTTCGTCTCTTTCTTCACAA 177
Query 183 TCGCTTTTCTCCTAACTCTTCTCTACACCACCGACTCCATCATCTCTTCTAAAAACAACT 242
||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 178 TCGCTTTTCTCTTAACTCTTCTCTACACCACCGACTCTATCATCCCTTCTAAAAACAACT 237
Query 243 CCGCCACCGTCTCCTCCGCCGTCAATTCTGCCGTCACCACCGCTACC-ATCTCTCAGTTA 301
||||||||||||||||||||||||| || |||||| |||||||| || ||| |||||||
Sbjct 238 CCGCCACCGTCTCCTCCGCCGTCAACTCCGCCGTCTCCACCGCT-CCGATCACTCAGTTG 296
Query 302 CCAACAACAGCCATCAATGCAATGCTTCACTACGCTTCAAGATCAAACGACAGCTACCAC 361
|||||| ||| |||||||||||||||||||||||| || ||||| |||||||||| ||||
Sbjct 297 CCAACAGCAGTCATCAATGCAATGCTTCACTACGCGTCGAGATCTAACGACAGCTTCCAC 356
Query 362 ATGTCATACGGAGAGATGAAATCAATCTCCGACGTCCTCCGCCGCTGCTCTCCGCCGTGT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATGTCATACGGAGAGATGAAATCAATCTCCGACGTCCTCCGCCGCTGCTCTCCGCCGTGT 416
Query 422 AATCTCTTAGTCTTCGGTCTTACACACGAAACCCTTCTCTGGAAATCGCTAAACCACAAC 481
|||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 417 AATCTCCTGGTCTTCGGCCTAACACACGAAACCCTTCTCTGGAAATCGCTAAACCACAAC 476
Query 482 GGGCGTACAGTTTTCATCGAAGAGAATCGTTACTACGCTGCTTACTTCGAAGAAATCCAC 541
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 GGACGTACGGTTTTCATCGAAGAGAATCGTTACTACGCAGCTTACTTCGAAGAAATCCAC 536
Query 542 CCGGAGATCGAAGTCTTCGATGTTCAGTACACGACCAAAGCTCGTGAGGCGCGTGAGCTT 601
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 537 CCGGAGATCGAAGTCTTCGATGTTCAGTACACGACGAAAGCACGTGAGGCGCGTGAGCTA 596
Query 602 GTGTCGGCGGTTAAAGAAGCGGCGAGGAACGAGTGTCGTCCAGTGCAGAATCTTCTCTTT 661
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 597 GTGTCGGCGGTTAAAGAAGCGGCGACGAACGAGTGTCGTCCGGTGCAGAATCTTCTCTTC 656
Query 662 TCAGATTGTAAATTAGGACTCAATGATTTGCCGAATCATGTATACGATGTTGATTGGGAT 721
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 TCCGATTGTAAATTAGGACTCAATGATTTGCCGAATCATGTATACGATGTTGACTGGGAT 716
Query 722 GTGATCTTAGTTGATGGACCACGTGGCGACGGTGGAGATGTACCGGGGAGGATGTCGTCG 781
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 GTGATCTTAGTTGATGGACCACGTGGCGACGGTGGAGATGTACCGGGAAGGATGTCGTCG 776
Query 782 ATTTTCACGGCGGCGGTTCTTGCTCGGAGTAAAAAAGGCGGGAATCCGAAGACGCATGTG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATTTTCACGGCGGCGGTTCTTGCTCGGAGTAAAAAAGGCGGGAATCCGAAGACGCATGTG 836
Query 842 TTTGTTCATGATTATTACAGAGATGTTGAGAGACTTTGTGGGGATGAGTTTCTTTGCCGG 901
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 837 TTTGTTCATGATTATTACAGAGATGTTGAGAGACTTTGCGGCGATGAGTTTCTTTGCCGG 896
Query 902 GAGAATCTTGTGGAATCTAATGATCTGCTTGCGCACTACGTGTTGGAGAAGATGGATAAA 961
|||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 897 GAGAATCTTGTGGAGTCTAACGATATGCTTGCGCACTACGTGTTGGAGAGGATGGATAAA 956
Query 962 AACAGCACGCAGTTCTGTCGTGGTCGTAAGAAGAAACGCTCTGTTTCTTCTCCATCGGCT 1021
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 957 AACAGCACGCAGTTCTGTCGTGGTCGTAAGAA-A--CGCTCTGTTTCTTCTCCATCGGCT 1013
Query 1022 TGAGTTAAATGTGCGCTAAAATCTTGTGG-ACTGTGGAGAGTCAAACCAACCGACACGAC 1080
||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||
Sbjct 1014 TGAGTAAAATGTGCGCTAAAATCTTGTGGGACTGTGGAGAGTCAAATCAACCGACACAAC 1073
Query 1081 GGTGGTCATTGACACCGTCAATCGCGGAAGGAGTTTGTGTAAAATAA-TACGTTTTT--- 1136
|||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||||
Sbjct 1074 GGTGGTCATTAACACCGTCAATCGCGGA-GGAGTTTGTGTAACATAAATACTTTTTTTTT 1132
Query 1137 CTACCTTTAAATATTTTTTCCTGCTTTTTAAACTATGTGAAAATTCAATCAGATCAATTA 1196
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1133 CTACCTTTAAATATTTTTTCCTGCAATTTAAACTACGTGAAAATTCAATCAGATCAATTA 1192
Query 1197 AAATTTC 1203
|||||||
Sbjct 1193 AAATTTC 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5