BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67220.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951500 jgi|Araly1|951500|scaffold_803387.1 2039 0.0
Ahg496878 jgi|Araly1|496878|fgenesh2_kg.8__2694__AT5G67210.1 58.4 1e-07
> Ahg951500 jgi|Araly1|951500|scaffold_803387.1
Length=1314
Score = 2039 bits (1104), Expect = 0.0
Identities = 1247/1317 (95%), Gaps = 6/1317 (0%)
Strand=Plus/Plus
Query 18 TTCGTCTTCCGTCGTCAGCTCATGAAACTAAATCTCTCGAATCTCAGATTTCTACGT-AC 76
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 TTCGTCTCCCGTCGCCAGCTCATGAAACTAAATCTCTCGAATCTCAGATTTCTAC-TGAC 59
Query 77 CCGAAAATCGTTAATCTCCCAGACGCGAGCAATGACTCAAAATCCGGATCCAAAACCTGA 136
||||||||| || |||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 60 CCGAAAATCTTTCATCTCCCAAACGCGAACAATGACCCAAAATCCGGATCCAAAACCTGA 119
Query 137 TCCATCGCAGGTTCTAGACGATATCCTCTGTTCGGAGCAGCGTGATGGGCAGATTGAGGA 196
||| ||| | || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCGTCGAAAGTAGTAGACGATCTCCTCTGTTCGGAGCAGCGTGATGGGCAGATTGAGGA 179
Query 197 AACAGTCGACACAGCGCCGGCGAGCTTGGGCTCTCCAAGTCGGGTCTTAAGCATTGATAC 256
||| |||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACGGTCGACGCAGTGGCGGCAAGCTTGGGCTCTCCAAGTCGGGTCTTAAGCATTGATAC 239
Query 257 TAGAGTAGAGAGAGCTTGGGCACACTGGAAAAAACTGGGTAGACCCAAGTATATCGTTGC 316
||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 240 TAGGGTAGAGCGAGCTTGGGCACACTGGAAAAAACTGGGTAGACCTAAGTACATCGTTGC 299
Query 317 TCCAATGGTTGATAACTCTGAGCTTCCGTTTAGATTGCTCTGCCAGAAATACGGAGCTCA 376
||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct 300 TCCAATGGTGGATAACTCTGAGCTTCCCTTTCGATTGCTCTGCCAGAAGTACGGAGCTCA 359
Query 377 GGCTGCTTATACTCCGATGTTGCATTCTAGGATCTTCACCGAGACTGAGAAGTATAGAAA 436
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 360 GGCTGCTTATACTCCGATGTTGCATTCTAGGATTTTCACTGAGACTGAGAAGTATCGAAA 419
Query 437 TCAGGAGTTCACCACCTGTAAGGAGGACAGGCCATTGTTTGTGCAGTTCTGTGCTAATGA 496
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCAGGAATTCACCACTTGTAAGGAGGACAGGCCATTGTTTGTGCAGTTCTGTGCTAATGA 479
Query 497 TCCTGATACGTTATTGGAAGCTGCAAAGAGAGTCGAACCTTACTGCGACTATGTTGATAT 556
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TCCTGATACACTATTGGAAGCTGCAAAGAGAGTCGAACCTTACTGCGATTATGTTGATAT 539
Query 557 CAATTTAGGGTGTCCTCAGCGTATAGCGAGGCGAGGAAATTATGGTGCATTCTTGATGGA 616
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 540 CAATTTAGGGTGTCCTCAGCGTATAGCAAGACGAGGAAATTATGGTGCATTCTTGATGGA 599
Query 617 TAATCTTCCTTTGGTGAAATCACTTGTTGAAAAGTTAGCTCAGAACCTCAATGTTCCTGT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAATCTTCCTTTGGTGAAATCACTTGTTGAAAAGTTAGCTCAGAACCTCAATGTTCCTGT 659
Query 677 CTCCTGTAAAATCCGGATCTTCCCGAACCTGGAAGATACACTCAAGTACGCCAAGATGCT 736
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 660 CTCCTGCAAAATTCGGATCTTCCCGAACCTTCAAGATACACTCAAGTACGCCAAGATGCT 719
Query 737 AGAAGATGCTGGTTGCTCGCTCCTAGCTGTTCACGGGCGAACAAGAGATGAGAAAGACGG 796
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 720 AGAAGATGCTGGTTGCTCGCTGCTAGCTGTTCACGGCCGAACAAGAGATGAGAAAGACGG 779
Query 797 GAAGAAA-TTTAGAGCTGATTGGAGCGCAATCAAGGAAGTGAAAAACGCTATGAGAATCC 855
||| ||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 780 GAA-AAAGTTTAGAGCTGATTGGAGTGCTATCAAGGAAGTGAAAAACGCTTTGAGAATCC 838
Query 856 CTGT-CTTAGCGAATGGGAATGTAAGATGCATCGAAGATGTCGATAACTGCATCAAAGAG 914
|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 CTGTTCTT-GCGAATGGGAATGTAAGATGCATCGAAGATGTTGATAACTGCATCAAAGAG 897
Query 915 ACGGGTGTTGAAGGTGTTCTCTCTGCGGAGACGCTTCTTGAAAACCCGGCGGCCTTTGCT 974
|||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 898 ACGGGTGTCGAAGGTGTTCTTTCTGCTGAGACGCTTCTTGAAAACCCAGCGGCCTTTGCT 957
Query 975 GGGTTTAGAACAGCTGAATGGGCAAAAGATAACGAAGAAGAGGGATTCGTCGATGGAGGG 1034
||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 958 GGGTTTAGAACAGCTGAGTGGGTATCAGATAACGAAGAAGAGGGATTCGTCGATGGAGGA 1017
Query 1035 TTAGACCAGGGAGATTTAGTTGTTGAGTATTTAAAGCTGTGTGAGAAGCATCCGGTTCCA 1094
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 TTAGATCAGGGAGATTTAGTTGTTGAGTATTTAAAGTTGTGTGAGAAGCATCCGGTTCCG 1077
Query 1095 TGGAGGATGATTCGATCTCACGTTCATAAGATGTTGGGAGAATGGTTTAGAATTCATCCA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGGAGGATGATTCGATCTCACGTTCATAAGATGTTGGGAGAATGGTTTAGAATTCATCCA 1137
Query 1155 CAAGTTAGAGAGCAACTTAATGCTCAAAACATATTGACGTTTGAGTTTCTATACGGACTT 1214
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 CAAGTTAGAGAACAGCTTAATGCTCAAAACATATTGACGTTTGAGTTTCTATACGGTCTT 1197
Query 1215 GTGGATCAGCTAAGAGAGCTTGGAGGAAGAGTTCCACTCTACAAGAAAAAGAAGATAGAT 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTGGATCAGCTAAGAGAGCTTGGAGGAAGAGTTCCACTCTACAAGAAAAAGAAGATAGAT 1257
Query 1275 ACTCTGACTCCACAAGACTCTCCACAAAGGGTTTAGAGAGTTGAAACTATACGTTCT 1331
||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1258 ACTCTGACTCCACAAGAGTCTCCACAAAGGATTTAGAGAGTTGAAAATATACGTTCT 1314
> Ahg496878 jgi|Araly1|496878|fgenesh2_kg.8__2694__AT5G67210.1
Length=1199
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 1435 GAAATTTTAATTGATCTGATTGAATTTTCAC 1465
|||||||||||||||||||||||||||||||
Sbjct 1199 GAAATTTTAATTGATCTGATTGAATTTTCAC 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5