BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67230.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496876 jgi|Araly1|496876|fgenesh2_kg.8__2692__AT5G67230.1 1321 0.0
> Ahg496876 jgi|Araly1|496876|fgenesh2_kg.8__2692__AT5G67230.1
Length=1560
Score = 1321 bits (715), Expect = 0.0
Identities = 773/801 (97%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 5 agaa-gaaggaagaagaagaagaCGATGAAGCTCTCTGTGTTTCGATTGAGCTATTGGAA 63
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGGAA-GAAGAAGAAGAAGAAGATGAAGCTCTCTGTGTTTCGATTGAGCTATTGGAA 59
Query 64 CCGTCGAGGAAGTAGTTTCAGATCATCGCCGTCGTTGGAT-CCATCATTCGATGGCAAAT 122
|||||||||||| |||||| |||||||||| ||||||||| ||| ||||||| |||||||
Sbjct 60 CCGTCGAGGAAGCAGTTTCCGATCATCGCCTTCGTTGGATCCCA-CATTCGACGGCAAAT 118
Query 123 CTCCGTCGTCTGTGTTTTGGTTCGTGATTCATGGTCTCTGCTGCTTGATCAGCTTGATTC 182
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 CTCCGTCGTCTGTGTTTTGGTTCGTCATTCATGGTCTCTGCTGCTTGATCAGCTTGATTT 178
Query 183 TAGGGTTCCGATTCAGCCATTTAGTACTCTTCTTCCTTTTCTCGACTTCCGTCACCAATC 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 TAGGGTTCCGATTCAGCCATTTAGTACTCTTCTTCCTCTTCTCGACTTCCGTCACCAATC 238
Query 243 TATACACAACGCCATTTCTCTTTGCCGGAAACGGCGGTGTAAGCCAGCTTCTCCGGCTAA 302
||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 239 TATACACAACGCCTTTTCTCTCCGCCGGAAGCGGCGGTGTAAGCCAGCTTCTCCGGCTAA 298
Query 303 AACCTCTGGAAACAGCGACTAACAGCACGGTGAAGAAGAACTCTCGAGTGGTGGTTGGAA 362
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AACCTCTAGAAACAGCAACTAACAGCACGGTGAAGAAGAACTCTCGAGTGGTGGTTGGAA 358
Query 363 GACACGGGATCCGGATCCGTCCATGGCCTCACCCGAATCCGATTGAGGTATTGAGAGCTC 422
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 GACACGGGATCCGGATCCGTCCATGGCCTCACCCGAATCCGATTGAGGTCTTGAGAGCTC 418
Query 423 ATCAGTTGCTTGTGAGAGTACAGAAAGAGCAGAAATCGATGTACGGTGTGAGGAGCCCTA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCAGTTGCTTGTGAGAGTACAGAAAGAGCAGAAATCGATGTACGGTGTGAGGAGCCCTA 478
Query 483 GGACTGTGATTGTGGTGACGCCGACTTATGTACGGACTTTTCAGGCGCTTCATTTGACCG 542
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 AGACTGTGATTGTGGTGACGCCGACTTATGTACGGACTTTCCAGGCGCTTCATTTGACCG 538
Query 543 GAGTTATGCACTCGCTTATGCTTGTTCCGTACGATTTGGTTTGGATCGTTGTGGAAGCTG 602
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 GAGTTATGCACTCGCTTATGCTTGTTCCTTACGATTTGGTTTGGATCGTTGTGGAAGCTG 598
Query 603 GTGGAATCACTAACGAGACTGCTTCGTTTATCGCAAAATCAGGATTAAAGACGATTCACT 662
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 GTGGAATCACCAACGAGACTGCTTCGTTTATCGCAAAATCAGGATTGAAGACGATTCACT 658
Query 663 TAGGATTCGATCAGAAAATGCCTAATACATGGGAAGATCGTCACAAATTGGAGACCAAAA 722
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TAGGATTCGATCAGAAAATGCCTAATACTTGGGAAGATCGTCACAAATTGGAGACCAAAA 718
Query 723 TGAGACTTCACGCCTTGAGAGTTGTGAGAGAGAAGAAGTTAGATGGGATTGTTATGTTTG 782
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 719 TGAGACTTCACGCCTTGAGAATCGTGAGAGAGAAGAAGTTAGATGGGATTCTTATGTTTG 778
Query 783 CTGATGATAGCAATATGCATA 803
|||||||||||||||||||||
Sbjct 779 CTGATGATAGCAATATGCATA 799
Score = 1051 bits (569), Expect = 0.0
Identities = 709/776 (91%), Gaps = 11/776 (1%)
Strand=Plus/Plus
Query 882 ATGCA-GATGAATTATCATCGATCTTGAAGAATGAACAAGGGAAGAACAAAGAGAAACCT 940
||||| |||||||||| ||| |||||||||| ||| |||||||| ||||||||||||
Sbjct 793 ATGCATAATGAATTATCGTCGGTCTTGAAGAAAGAAGAAGGGAAGCGTAAAGAGAAACCT 852
Query 941 TCAATGCCAATCCAAGGTCCTAGTTGTAATTCCTCTGAGAAATTAGTGGGTTGGCACATT 1000
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 853 TCAATGCCAATCCAAGGTCCTAGTTGTAATTCCTCTGAGAAATTAGTGGGCTGGCACATT 912
Query 1001 TTCAACACACAGCCTTATGCCAAGAAGACTGCAGTGTATATCGATGAGAAAGCGCCTGTG 1060
|||||||| || |||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 913 TTCAACACTCAACCTTATGCCAAGAAGACTGCGGTTTATATCGATGAGAAAGCGGCTGTG 972
Query 1061 ATGCCTAGTAAGATGGAATGGTCAGGGTTTGTGTTGAATTCTAGATTGCTCTGGAAGGAA 1120
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 973 ATGCCTATTAAGATGGAATGGTCAGGGTTTGTGTTGAATTCTAGGTTGCTTTGGAAGGAA 1032
Query 1121 TCTTTAGATGATAAACCAGCATGGGTTAAAGATCTCAGCTTGTTGGATGATGGTTATGCG 1180
||| ||||||| ||||| |||||| |||||||||||||||||||||||||| | | |
Sbjct 1033 TCTGTAGATGAGAAACCGGCATGGATTAAAGATCTCAGCTTGTTGGATGATA---ACGAG 1089
Query 1181 GAAATTGAGAGTCCTTTGTCTTTGGTGAAGGATCCTTCCATGGTGGAGCCACTTGGAAGC 1240
|||||||| ||||| || ||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 1090 GAAATTGACAGTCCATTATCTCTGGTCAAGGATCCTTCCATGCTGGAGCCACTTGGAAGC 1149
Query 1241 TGTGGCCGTCGTGTCTTGCTTTGGTGGCTTCGAGTTGAAGCTCGAGCTGATAGCAAATTC 1300
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1150 TGTGGCCGCCGTGTCTTGCTTTGGTGGCTTCGTGTTGAAGCTCGAGCTGATAGCAAATTC 1209
Query 1301 CCACCTGGCTGGATCATAAAGTCACCTTTAGAAATCACAGTGCCATCAAAGCGGACACCC 1360
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1210 CCACCTGGCTGGATCATAAAGTCGCCTTTGGAAATCACAGTACCATCAAAGCGGACACCT 1269
Query 1361 TGGCCAGACTCTTCCTCAGAGCTCCCAGCGGCGGCGATCAAAGAGGCAAAAAGCAACTCT 1420
||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||
Sbjct 1270 TGGCCAGACTCTTCCTCAGAGCTCCCAGCGGCG---ATCAAAGAAGCAAAAAGCGACACT 1326
Query 1421 AAGCCAAGAGTG-TCGAAGAGCAAGAGCTATAA-GGAGAAACAAGAACCTAAAGCTTTCG 1478
|||||||||| | || || |||||||||| || || |||||||||||| |||||||||
Sbjct 1327 AAGCCAAGAG-GATCAAATAGCAAGAGCTCGAAAGG-GAAACAAGAACCGAAAGCTTTCA 1384
Query 1479 ATGGTGTCAAAGTGTCAGCAACTAGCTGAAGAAGCTTCTATAGATAGATCGAGTTTCATT 1538
||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1385 ATGGTGTCAAAGTATCAACAACTAGTTGAAGAAGCTTCTATAAATAGATCGAGTTTCATT 1444
Query 1539 TCATATTCTTTTTCACCGTAAATATCGGAAAATTGTTTTGTGTGCATTAGCTTCATTGTA 1598
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1445 TCATATTCTTTTTCACAGTATATATCGGAAAATTGTTTGGTGTGCATTAGCTTCATTGTA 1504
Query 1599 TACAGTACAAAAATCATATGAGATGTTTTAAGTTCTTCAAATCGATACTTAGCTCT 1654
|||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1505 TACAATACAAAAATCATATGGGATGTTTTGATTTCTTCAAATCGATACTTAGCTCT 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5