BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67240.1
Length=2639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951498 jgi|Araly1|951498|scaffold_803385.1 3238 0.0
> Ahg951498 jgi|Araly1|951498|scaffold_803385.1
Length=2371
Score = 3238 bits (1753), Expect = 0.0
Identities = 2182/2387 (91%), Gaps = 38/2387 (2%)
Strand=Plus/Plus
Query 60 aaaaCTCTTGGTAATGGAGCATAAACTAGCCACTGCTGAGAAAAAATTGCTAGTAGACCT 119
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 8 AAAACTCTTGGTAATGGAGCATAAACTAGCTACTGCTGAGAAAAAAGTGCTAGTAGACTT 67
Query 120 AGTCAAGCTAGTACAGAAACGAGGTTTGGAAGGCGAGAACGGAGGATGGAAGGAATTTCT 179
|| |||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct 68 GGTGAAGCTAGTTCAGAAACGTGGTTTAGAAGGCGAAAACGGAGGTTGGAAGGAATTTCT 127
Query 180 AAATGTTTACGACAAAAAATTAGGATCGAGTTTGAGTGATCCTGCGAGACGTTCCAATGA 239
||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 128 AAATGTTTACGACAAAAAATTCGGATCAAGTTTGAGTGATCCTTCGAGACGTTCCAATGA 187
Query 240 TGTTTTGGTTGCTTTTCTTTTGACATTTAAAAAGAAAGAAGATTTGCAGCTAATAGCTAG 299
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 188 TGTGTTGGTTGCTTTTCTTTTGACCTTCAAAAAGAAAGAAGATTTGCAGCTAATAGCTAG 247
Query 300 GGTTATGCAATGTGGTGCTAATCGTGAACTAATTGAGAAATTCAAGCAAGAGA-CTCCGG 358
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 248 GGTTATGCAATGTGGTGCTAATCGTGAACTAATTGAGAAATTCAAGCAAGA-ATCTCCGG 306
Query 359 ATAAAGAGACTCCTGAGCAGAGGCTAGTTCGATTGACTATTACTCATGACGATTATCCTG 418
| ||||||||||||||||||||||||||||||||||||||||| ||| | | || |||
Sbjct 307 ACAAAGAGACTCCTGAGCAGAGGCTAGTTCGATTGACTATTACGCATTTCCAGTACCCTA 366
Query 419 GAAACTATACGTTCCCTTCCTACGCTGAGGATTGGTATGTAACTGAGCTTGGAAAGAAGA 478
||||||| |||| |||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 367 CAAACTATTCGTTTCCTTCCTACGCTGAGGATTGGTTTGTAACTGAACTTGGAAAGAAGA 426
Query 479 AGTCGAAAGTGATTAAATCTACTAGAATGCTTTCTATTGATTGTGAGATGGTTACCTGTG 538
|||| |||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 427 AGTCCAAAGTGATGAAATCAACTAGAATGCTTGCTATTGATTGTGAGATGGTTACCTGTG 486
Query 539 AAGATGGGAGCC-AGGCTTTAGTTAGAGTTGGCGCTGTGGACCGTGACTTAAAGGTGGTT 597
| ||||||| || ||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 487 ATGATGGGA-CCGAGGCTGTAGTTAGAGTTGGCGCAGTGGACCGCGACTTAAAGGTGGTT 545
Query 598 CTTGACAAATTTGTGAAACCGGACAAACCAGTTATTGACTATAAGACGGATATTACTGGA 657
|||||||| |||||||||||||||||| | |||||| |||||||||| || |||||||||
Sbjct 546 CTTGACAAGTTTGTGAAACCGGACAAAACGGTTATTAACTATAAGACTGACATTACTGGA 605
Query 658 GTTACTGCTGAGGATCTTGAGAGAGCTACTCTTTCTGTTGCAGATATTCaaaaaaaaTTG 717
|||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 606 GTTACTGCTGAGGATCTTGAGAGAGCTACTCTATCTGTAACAGATATTCAGAAAAAATTG 665
Query 718 CGTAGGTTTCTTTCTGTGGGAACTATTTTGGTAGGTCATGGTTTGCATAATGATCTTCAA 777
|| |||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 666 CGGAGGTTTCTTTCTCAGGGAACTATTTTGGTAGGTCACGGTTTGGATAATGATCTTAAA 725
Query 778 GTGTTGAGGATAGATCATGCGAGAGTAATAGATACTTCATATGTATTTGAGTTTGTCGA- 836
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 726 GTGTTGAGGATAGATCATGCGAGAGTAATAGATACTTCATTTGTATTTGAGTTTGA-GAA 784
Query 837 TGCACCAAAGACTCAAAGACCTTCTTTGAATAATCTATGCAAGTCTGTTTTAGGTCAAGA 896
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 785 TGCACCAAAGACTCATAGACCTTCTTTGAATAATCTATGCAAGGCTGTTTTGGGTCAAGA 844
Query 897 AGTGCGAATGGACGGTGCTGCTCACAATTGTGTTCATGACGCAGCAGCTGCCATGAAACT 956
| || ||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 845 ACTGAGAATGCCCGATGCTGCTCACAATTGTGTTCATGACGCAGCAGCTTCCATGAAACT 904
Query 957 TGTACTTGCTGCTGTAGAAAAAGGAGCAGCCACTTTAATTCAACCAA-CTGAAGAAATGA 1015
||||||||||| |||||||||||||| || |||| ||| ||| || |||||||||||
Sbjct 905 TGTACTTGCTGTTGTAGAAAAAGGAGTAGACACTACAATCCAAA-AATCTGAAGAAATGT 963
Query 1016 TGGTGGCTGAAAAGAGAAGACAGGAGGCAAGACAGGAGGCTGGTAAGGCACAGCTCTTCC 1075
|||||||||| |||| ||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 964 TGGTGGCTGAGAAGAAAAGACAGGAGGAAAGACAGGAAGCTGGTAAGACACAGCTCTTCC 1023
Query 1076 TTCATAAAATCCCTCACGATGTTCCATCTGAAGAGTTACATGGAGTTCTTAGCGGGAATT 1135
||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| | |
Sbjct 1024 TTCATAAAATCCCTCACTATGTTCCATCTGAAGAGTTACAAGGAGTTCTTAACGGGGACT 1083
Query 1136 TCACACTTGTTGTTAAGCCACCA-AAAAC-A-GGAGGTTATTCTACTGCAGTCGTTGATT 1192
||||||| || |||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 1084 TCACACTCGTAGTTAAGCCACCACAAAAAGAAGGAGGTTATTCTACTGCAGTCGTTGATT 1143
Query 1193 TTAGTAGTCCGGAAGAAGCAAATGAAGCATTTGAAAATGTTGAAGGAGACGTAGCTAAGG 1252
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TTAATAGTCCGGAAGAAGCAAATGAAGCATTTGAAAATGTTGAAGGAGACGTAGCTAAGG 1203
Query 1253 ATAAATCGGGTTTGCCACaaaaaaaGGCTGTGTTGAAGCTGAGTTCTGGATTAGCAGTTA 1312
||||||| |||||||||||||||| || | ||||||||||||||||||||| || ||
Sbjct 1204 ATAAATCAGGTTTGCCACAAAAAATGGTTACACTGAAGCTGAGTTCTGGATTAGTAGCTA 1263
Query 1313 GTTTAT-TCGTTCGTAAAATGGTTCAAGATGATTCTCCGTGTGAAATCTCTACCTCCGAG 1371
|||||| | ||||||||||||||| |||||||||||| | ||||||||||||| || ||
Sbjct 1264 GTTTATAT-GTTCGTAAAATGGTTAAAGATGATTCTCTGAGTGAAATCTCTACAACCAAG 1322
Query 1372 AGAGCTCGTGCAGAGGAGAACAATGTGAGTTCTAAGAGACAGAAGACGGAAGATGAAACT 1431
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1323 AGAGCTCGAACAGAGGAGAACAATGTGAGTTCTAAGAGACAGAAGACAGAAGATGATTCT 1382
Query 1432 GAGGAGACC-AAAGAAGCAACTGTAAACCAAAGAGAGGCTGATAAGACAAAGCTTTTCCT 1490
||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 1383 GAGGA-ACCCAAAGAAGCAAATGTAAACCAAAAAGAGGCTGATAAGACAAAGCTCTTCCT 1441
Query 1491 TCATAAAATCCCACACGATGTTCCATCTCAAGAGTTACATGGAGTTCTTAACGGGGATTT 1550
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1442 TCATAAAATCCCTCACGATGTTCCATCTCAAGAGTTACATGGAGTTCTTAACGGCGATTT 1501
Query 1551 CACACTCGATGTTAAGCCACCAAAAAGAAAAGGAGGTTACTACAATGCAGTCGTTGATTT 1610
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 1502 CACACTCGAAGTTAAGCCACCAAAAAGAAAAGGAGGTTATTACAATGCAGTAGTTGGTTT 1561
Query 1611 TAATAGTCCAGAAGAAGCAAATGAAGCATTTGAAAATGTGGAAGGAGACGTAGTTAAGGA 1670
||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct 1562 TAATAATCCAGAAGAAGCAAATAAAGCATTTGAAAATGTTGTAGGAGACGTAGTTAAGGA 1621
Query 1671 TAA-GACGGGTTTGCCACAAAAAATGGTTGTATTCAAGCTGAGTTCTGGATCAGGAGTTA 1729
|| | ||||||| |||||||||||||||| || |||||||||||||| ||||||| ||
Sbjct 1622 GAAAG-CGGGTTTACCACAAAAAATGGTTGCGTTGAAGCTGAGTTCTGGCTCAGGAGCTA 1680
Query 1730 GTTTATATGTTCGTAAAATGGTTCATGATGATTCTCCGGGTGAAATCTCTACAACCAAGA 1789
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1681 GTTTATACGTTCGTAAAATGGTTCAAGATGATTCTCCGGGTGAAATCTCTACAAC-A-GA 1738
Query 1790 GAGCTCGAACAGAGGAGAGCAATATGAGTTCTAAGAGACAGAAGACAGAAGATGAATCTG 1849
| | | || | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1739 G-G----A---GA--A---CAATGTGAGTTCTAAGAGACAGAAGACAGAAGATGAATCTG 1785
Query 1850 AGGAGACCAAAGAAGCAAATGCAAAGCAAAGAGAGGCTGATAAGACAAAGCTCCTCCTTC 1909
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||
Sbjct 1786 AGGAGACCAAAGAAGCAAATGTAAACCAAAGAGAGGCTGATAAGACAAAGCTCTTCCTTC 1845
Query 1910 ATAAAATCCCTCTCAATGTCCCGTCTCAAGAGTTAAAAGTAGTTATTACCGGGCA-GTTC 1968
|||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||
Sbjct 1846 ATAAAATCCCTCTCAATGTCCCATCTCAAGAGTTAAAAGGAGTTATTACCGG-CAAGTTC 1904
Query 1969 ACACTTGAAGTTATGCCACCCAAAAGAAAAGGACGTTATTACAATGCAGTTGTTACTTTT 2028
||||| |||||||||| ||| |||||||||||| |||||||||| ||| ||||| ||||
Sbjct 1905 ACACTGGAAGTTATGCAACCAAAAAGAAAAGGAGGTTATTACAACGCATTTGTTGTTTTT 1964
Query 2029 AATAGTCCAGAAGAAGCAAATAAAGCATTTGAAAAAGTTAAAGGAGAAGCAGTTAAGGAG 2088
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 1965 AATAGTCCAGAAGAAGCAAATAAAGCATTTGACAAAGTTAAAGGTGAAGCAGCTAAGGAG 2024
Query 2089 AAAGGTGGTTTGGCACAAAAAATGGTTGCGTTTAAGCTGAGTTCAGGATCAGGAGCTTGT 2148
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2025 AAAGGGGGTTTGGCACAAAAAATGGTTGCGTTTAAGCTGAGTTCAGGATCAGGAGCCAGT 2084
Query 2149 TTATACGTTCGTAAAATGGTTCAAGATGAATCTGAGGAGACCAAAGAGGCAAATGCAAAC 2208
|||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 2085 TTATACGTCCGTAAAATGGTTCGAGATGAATCTGAGGAGGCCGAAGAGGCAAATGCAAAC 2144
Query 2209 CATTGTGAGGATGATCATTTAAAAGAAATGGAAGAACTGAAGGAAAAACTCAAAGCTATG 2268
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 2145 CATTGTGAGGAT---CATTTAAAGGAAATTGAAGAACTGAAGGAAAAACTCAAAGCTAAG 2201
Query 2269 GAGTTCGCAATCAGCTGCGAAGGTCATTCAAAAGAAATTGAAGAACTGAAGCAGAAGCTC 2328
|| || |||| ||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 2202 GACTTTGCAAACAGCTGCGAAGGTCATTCAAAAGAAATTGAAGAACTGAATCACAAACTC 2261
Query 2329 AATGCCAAGGAACATCAGATACAGGCTCAGGATAAGATTATAGCCAACCTCAAAATGAAA 2388
|| || |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 2262 AAAGCTAAGGAACATCAGATCCAGGCGCAGGATAAGATTATAGACAACCTCAAAATGAAA 2321
Query 2389 CTGGAGAAGAAACAGTCAAAGTCTCGGTCATGATTT-AACAGAAATC 2434
|||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2322 CTGGAGAAGAAACAGTCAAAGTCTCGGTAATGATTTTAACAGAAATC 2368
Score = 893 bits (483), Expect = 0.0
Identities = 644/721 (89%), Gaps = 14/721 (2%)
Strand=Plus/Plus
Query 1468 GCTGATAAGACAAAGCTTTTCCTTCATAAAATCCCACACGATGTTCCATCTCAAGAGTTA 1527
|||| ||||||| |||| ||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1002 GCTGGTAAGACACAGCTCTTCCTTCATAAAATCCCTCACTATGTTCCATCTGAAGAGTTA 1061
Query 1528 CATGGAGTTCTTAACGGGGATTTCACACTCGAT-GTTAAGCCACCA-AAAAGAAAAGGAG 1585
|| ||||||||||||||||| |||||||||| | |||||||||||| |||| | ||||||
Sbjct 1062 CAAGGAGTTCTTAACGGGGACTTCACACTCG-TAGTTAAGCCACCACAAAA-AGAAGGAG 1119
Query 1586 GTTACTAC-AATGCAGTCGTTGATTTTAATAGTCCAGAAGAAGCAAATGAAGCATTTGAA 1644
|||| | | | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1120 GTTA-TTCTACTGCAGTCGTTGATTTTAATAGTCCGGAAGAAGCAAATGAAGCATTTGAA 1178
Query 1645 AATGTGGAAGGAGACGTAGTTAAGGATAAGA-CGGGTTTGCCACAAAAAATGGTTGTATT 1703
||||| ||||||||||||| ||||||||| | | ||||||||||||||||||||| | |
Sbjct 1179 AATGTTGAAGGAGACGTAGCTAAGGATAA-ATCAGGTTTGCCACAAAAAATGGTTACACT 1237
Query 1704 CAAGCTGAGTTCTGGATCAGGAGTTAGTTTATATGTTCGTAAAATGGTTCATGATGATTC 1763
|||||||||||||||| || || ||||||||||||||||||||||||| | ||||||||
Sbjct 1238 GAAGCTGAGTTCTGGATTAGTAGCTAGTTTATATGTTCGTAAAATGGTTAAAGATGATTC 1297
Query 1764 TCCGGGTGAAATCTCTACAACCAAGAGAGCTCGAACAGAGGAGAGCAATATGAGTTCTAA 1823
|| | ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1298 TCTGAGTGAAATCTCTACAACCAAGAGAGCTCGAACAGAGGAGAACAATGTGAGTTCTAA 1357
Query 1824 GAGACAGAAGACAGAAGATGAATCTGAGGAGACC-AAAGAAGCAAATGCAAAGCAAAGAG 1882
||||||||||||||||||||| |||||||| ||| ||||||||||||| ||| |||| ||
Sbjct 1358 GAGACAGAAGACAGAAGATGATTCTGAGGA-ACCCAAAGAAGCAAATGTAAACCAAAAAG 1416
Query 1883 AGGCTGATAAGACAAAGCTCCTCCTTCATAAAATCCCTCTCAATGTCCCGTCTCAAGAGT 1942
|||||||||||||||||||| |||||||||||||||||| | |||| || ||||||||||
Sbjct 1417 AGGCTGATAAGACAAAGCTCTTCCTTCATAAAATCCCTCACGATGTTCCATCTCAAGAGT 1476
Query 1943 TAAAAGTAGTTATTACCGG-GCAGTTCACACTTGAAGTTATGCCACCCAAAAGAAAAGGA 2001
|| | | |||| ||| ||| | | |||||||| ||||||| |||||| ||||||||||||
Sbjct 1477 TACATGGAGTTCTTAACGGCG-ATTTCACACTCGAAGTTAAGCCACCAAAAAGAAAAGGA 1535
Query 2002 CGTTATTACAATGCAGTTGTTACTTTTAATAGTCCAGAAGAAGCAAATAAAGCATTTGAA 2061
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1536 GGTTATTACAATGCAGTAGTTGGTTTTAATAATCCAGAAGAAGCAAATAAAGCATTTGAA 1595
Query 2062 AAAGTTAAAGGAGAAGCAGTTAAGGAGAAAG-GTGGTTTGGCACAAAAAATGGTTGCGTT 2120
|| ||| |||||| | |||||||||||||| | ||||| |||||||||||||||||||
Sbjct 1596 AATGTTGTAGGAGACGTAGTTAAGGAGAAAGCG-GGTTTACCACAAAAAATGGTTGCGTT 1654
Query 2121 TAAGCTGAGTTCAGGATCAGGAGCTTGTTTATACGTTCGTAAAATGGTTCAAGATGAATC 2180
||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1655 GAAGCTGAGTTCTGGCTCAGGAGCTAGTTTATACGTTCGTAAAATGGTTCAAGATGATTC 1714
Query 2181 T 2181
|
Sbjct 1715 T 1715
Score = 749 bits (405), Expect = 0.0
Identities = 621/722 (86%), Gaps = 28/722 (4%)
Strand=Plus/Plus
Query 1051 GAGGCTGGTAAGGCACAGCTCTTCCTTCATAAAATCCCTCACGATGTTCCATCTGAAGAG 1110
||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1416 GAGGCTGATAAGACAAAGCTCTTCCTTCATAAAATCCCTCACGATGTTCCATCTCAAGAG 1475
Query 1111 TTACATGGAGTTCTTAGCGG-GAATTTCACACTTGTTGTTAAGCCACC--AAA-AACAGG 1166
|||||||||||||||| ||| | |||||||||| | ||||||||||| ||| || |||
Sbjct 1476 TTACATGGAGTTCTTAACGGCG-ATTTCACACTCGAAGTTAAGCCACCAAAAAGAAAAGG 1534
Query 1167 AGGTTATT-CTACTGCAGTCGTTGATTTTAGTAGTCCGGAAGAAGCAAATGAAGCATTTG 1225
|||||||| | | |||||| |||| ||||| || ||| |||||||||||| |||||||||
Sbjct 1535 AGGTTATTAC-AATGCAGTAGTTGGTTTTAATAATCCAGAAGAAGCAAATAAAGCATTTG 1593
Query 1226 AAAATGTTGAAGGAGACGTAGCTAAGGATAAATCGGGTTTGCCACaaaaaaaGGCTGTGT 1285
||||||||| ||||||||||| |||||| ||| ||||||| |||||||||| || || ||
Sbjct 1594 AAAATGTTGTAGGAGACGTAGTTAAGGAGAAAGCGGGTTTACCACAAAAAATGGTTGCGT 1653
Query 1286 TGAAGCTGAGTTCTGGATTAGCAGTTAGTTTATTCGTTCGTAAAATGGTTCAAGATGATT 1345
|||||||||||||||| | || || |||||||| ||||||||||||||||||||||||||
Sbjct 1654 TGAAGCTGAGTTCTGGCTCAGGAGCTAGTTTATACGTTCGTAAAATGGTTCAAGATGATT 1713
Query 1346 CTCCGTGTGAAATCTCTACCTCCGAGAGAGCTCGTGCAGAGGAGAACAATGTGAGTTCTA 1405
||||| |||||||||||| | | | ||||||||||||||||||||||||
Sbjct 1714 CTCCGGGTGAAATCTCTA----C---A-A-------CAGAGGAGAACAATGTGAGTTCTA 1758
Query 1406 AGAGACAGAAGACGGAAGATGAAACTGAGGAGACCAAAGAAGCAACTGTAAACCAAAGAG 1465
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1759 AGAGACAGAAGACAGAAGATGAATCTGAGGAGACCAAAGAAGCAAATGTAAACCAAAGAG 1818
Query 1466 AGGCTGATAAGACAAAGCTTTTCCTTCATAAAATCCCACACGATGTTCCATCTCAAGAGT 1525
||||||||||||||||||| ||||||||||||||||| | | |||| |||||||||||||
Sbjct 1819 AGGCTGATAAGACAAAGCTCTTCCTTCATAAAATCCCTCTCAATGTCCCATCTCAAGAGT 1878
Query 1526 TACATGGAGTTCTTAACGGGGATTTCACACTCGATGTTAAGCCACCAAAAAGAAAAGGAG 1585
|| | |||||| ||| ||| | |||||||| || |||| || |||||||||||||||||
Sbjct 1879 TAAAAGGAGTTATTACCGGCAAGTTCACACTGGAAGTTATGCAACCAAAAAGAAAAGGAG 1938
Query 1586 GTTACTACAATGCAGTCGTTGATTTTAATAGTCCAGAAGAAGCAAATGAAGCATTTGA-A 1644
|||| ||||| ||| | |||| ||||||||||||||||||||||||| |||||||||| |
Sbjct 1939 GTTATTACAACGCATTTGTTGTTTTTAATAGTCCAGAAGAAGCAAATAAAGCATTTGACA 1998
Query 1645 AATGTGGAAGGAGACGTAGTTAAGGATAAGACGGG-TTTGCCACAAAAAATGGTTGTATT 1703
|| || |||| || | || |||||| || | ||| |||| ||||||||||||||| ||
Sbjct 1999 AA-GTTAAAGGTGAAGCAGCTAAGGAGAA-AGGGGGTTTGGCACAAAAAATGGTTGCGTT 2056
Query 1704 CAAGCTGAGTTCTGGATCAGGAGTTAGTTTATATGTTCGTAAAATGGTTC-ATGATGATT 1762
||||||||||| |||||||||| |||||||| || ||||||||||||| | ||||| |
Sbjct 2057 TAAGCTGAGTTCAGGATCAGGAGCCAGTTTATACGTCCGTAAAATGGTTCGA-GATGAAT 2115
Query 1763 CT 1764
||
Sbjct 2116 CT 2117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99529810185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5