BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67260.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951496 jgi|Araly1|951496|scaffold_803383.1 1766 0.0
> Ahg951496 jgi|Araly1|951496|scaffold_803383.1
Length=1147
Score = 1766 bits (956), Expect = 0.0
Identities = 1092/1156 (94%), Gaps = 15/1156 (1%)
Strand=Plus/Plus
Query 141 TTCTTCTTC-CGTGAAGAAGAAGAAGATGGCTTTGGAGAAAGAGGAAGAAGCGTCACAAA 199
||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTCTTCTTCACG-GAAGAAGAAGAAGATGGCTTTGGAGAAAGAAGAAGAAGCGTCACAAA 59
Query 200 ACGGTGCGTTTTGTGTCCTTGATGGGCTCTATTGCGAGGAAGAAACCGGGTTTGT-G--G 256
||| ||||||||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 60 ACGCACCGTTTTGTGTCCTTGATGGGCTCTACTGTGAGGAAGAAACCGGGTTTGTGGAAG 119
Query 257 -AGGACGATCTTGATGACGATGGAGATTTAGATTTTCTCGAGAAATCTGATGAGAGTGTT 315
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGGA-GATCTTGATGAC---GGAGATTTAGATTTTCTCGAGAAATCTGATGAGAGTGTC 175
Query 316 GTAAAGTTTCAGTTTTTACCTCTTTTGGATATGTTCTTATGGGATGACGATGAGATTCTG 375
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||
Sbjct 176 GTAAAGTTTCAGTTTTTACCTCTTTTGGATGTGTTTTTATGGGATGACGATGAGCTTATG 235
Query 376 AGTTTGATTTCAAAGGAAAACGAAACGAATCCATGTTTTGGGGAACAAATCTTAGATGGC 435
||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 236 AGTCTGATTTCGAAGGAAAACGAAACGAATCCATGTTTTGGGGAAGAAATCTTAGATGGG 295
Query 436 TTTTTGGTTTCTTGTAGGAAAGAGGCTTTAGATTGGGTTCTTAGGGTTAAATCTCATTAT 495
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 296 TTTTTGGTTTCTTGTAGAAAAGAGGCTTTAGATTGGGTTTTTAGGGTTAAATCTCATTAC 355
Query 496 GGGTT-TACTTCATTGACGGCTATACTTGCTGTGAACTACTTCGATAGGTTTATGACAAG 554
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGGTTCT-CTTCATTGACGGCTATACTTGCTGTGAACTACTTCGATAGGTTTATGACAAG 414
Query 555 TATAAAGCTTCAGACTGATAAGCCATGGATGTCTCAGCTTGTTGCTGTGGCTTCTTTGTC 614
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 415 TATAAAGCTTCAGACTGATAAGCCATGGATGTCTCAGCTTGTAGCTGTGGCTTCTTTGTC 474
Query 615 TTTAGCTGCTAAAGTTGAAGAGATTCAAGTTCCATTGCTCTTAGACCTCCAAGTGGAAGA 674
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 475 TTTAGCTGCTAAAGTTGAAGAGATTCAAGTTCCATTACTCCTAGACCTCCAAGTGGAAGA 534
Query 675 AGCAAGATATCTCTTTGAAGCTAAGACGATTCAAAGAATGGAGCTTTTGATTCTTTCTAC 734
|||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 535 AGCAAGATATGTCTTTGAAGCTAAGACTATACAAAGAATGGAGCTTTTGATTCTTTCTAC 594
Query 735 TCTTCAATGGAGAATGCACCCTGTGACTCCAATCTCTTTCTTTGATCACATTATCCGGCG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCTTCAATGGAGAATGCACCCTGTGACTCCAATCTCTTTCTTTGATCACATTATCCGGCG 654
Query 795 ATTTGGCTCTAAATGGCACCAGCAATTAGACTTCTGTAGGAAGTGTGAGCGTCTTCTGAT 854
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 655 ATTTGGTTCTAAATGGCACCAGCAATTGGACTTCTTTAGGAAGTGTGAGCGTCTTCTGAT 714
Query 855 CTCTGTTATTGCTGATACGAGGTTTATGAGGTACTTCCCTTCTGTCTTAGCTACTGCAAT 914
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 715 CTCTGTTATTGCTGATGTGAGGTTTATGAGTTACTTCCCTTCTGTCTTAGCTACTGCAAT 774
Query 915 AATGATCCTTGTCTTCGAGGAATTGAAGCCATGTGATGAAGTTGAATACCAATCTCAAAT 974
|||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 775 AATGTTCTTTGTCATCGAGGAATTGAAACCATGTGATGAAGTTGAATACCAATCTCAAAT 834
Query 975 AACGACTCTACTCAAAGTCAATCAGGAGAAAGTAAATGAATGCTATGAACTGTTGTTGGA 1034
|| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 835 AATGACTCTACTCAAAGTTAATCAGGAGAAAGTAAATGAATGCTATGAACTATTGCTGGA 894
Query 1035 GCACAATCCAAGCAAGAAGAGGATGATGAATTTGGTTGATCAGGACAGTCCAAGTGGTGT 1094
|||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 895 GCACAATCCAAGCAAGAAGAGGGTGATGAATTTGCTAGATCAGGACAGTCCAAGTGGTGT 954
Query 1095 ATTAGACTTTGATGACAGCTCAAATAGCTCCTGGAATGTCTCCACTACTGCTTCAGTGTC 1154
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 955 CTTAGACTTTGACGACAGCTCAAATAGCTCCTGGAATGTCTC---TACTGCTTCAGTGTC 1011
Query 1155 CTCATCATCTTCGTCTCCAGAGCCTCTGCTCAAGAGAAGAAGAGTTCAGGAGCAGCAAAT 1214
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1012 CTCATCATCTTCATCTCCAGAGCCTCTGCTCAAGAGAAGGAGAGTGCAGGAGCAACAAAT 1071
Query 1215 GAGATTGCCCTCAATAAACCGTATGTTTCTCGATGTGCTTAGTAGTCCTCGCTAGTACCT 1274
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GAGATTGCCTTCAATAAATCGTATGTTTCTCGATGTGCTTAGTAGTCCTCGCTAGTACCT 1131
Query 1275 TTCTTTGATCAAATGT 1290
||||||||||||||||
Sbjct 1132 TTCTTTGATCAAATGT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5