BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G67265.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951495 jgi|Araly1|951495|scaffold_803382.1                        298    1e-80


> Ahg951495 jgi|Araly1|951495|scaffold_803382.1
Length=260

 Score =  298 bits (161),  Expect = 1e-80
 Identities = 203/222 (91%), Gaps = 7/222 (3%)
 Strand=Plus/Plus

Query  19   AAGGAAATGGAGACTGAAAAAAGAAAAGAGGATGGATCATCATCAAAAGTGGTGGTGGAA  78
            |||||||||||||||||||||| | ||||||||||   |||||||||||| |||||||||
Sbjct  16   AAGGAAATGGAGACTGAAAAAATACAAGAGGATGG---ATCATCAAAAGTTGTGGTGGAA  72

Query  79   ACAACGGAGCAACGTTCCTCGGCGGGGAAAGGCACAGAGCAAAGAAATGTACAAGTGGTT  138
            || ||||| || ||||| ||||||||||||||| ||||||||||||||||| | ||||||
Sbjct  73   ACGACGGAACATCGTTCTTCGGCGGGGAAAGGCTCAGAGCAAAGAAATGTAGAGGTGGTT  132

Query  139  CATCAATCTCATCCCAAAACTAGCGGC-GACGTTCTAGTCGGAGCTGCTGCTGCCGTTGA  197
            ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct  133  CATCAATCTCATCCCAAAACTAGCGGCGGA-GTTCTTGTCGGAGCTGCTGCTGCCGTTGA  191

Query  198  ATCCACCCTTCAATCTGCCAAAGAAGTCATCTCT-AAA-TAA  237
            |||||||||| ||||||||||||||||||||||| ||| |||
Sbjct  192  ATCCACCCTTAAATCTGCCAAAGAAGTCATCTCTCAAAATAA  233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5