BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67270.1 Length=1265 Score E Sequences producing significant alignments: (Bits) Value Ahg496873 jgi|Araly1|496873|fgenesh2_kg.8__2689__AT5G67270.1 1742 0.0 > Ahg496873 jgi|Araly1|496873|fgenesh2_kg.8__2689__AT5G67270.1 Length=1240 Score = 1742 bits (943), Expect = 0.0 Identities = 1165/1264 (92%), Gaps = 47/1264 (4%) Strand=Plus/Plus Query 1 ATTTTCTATCTTTGTTCTCTTCTCCTAATTTCaaaagagccgttagagagagacagatcg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATTTTCTATCTTTGTTCTCTTCTCCTAATTTCAAAAGAGCCGTTAGAGAGAGAGAGATCG 60 Query 61 agaaagaaccagagagagaaac--------ctgagaaaatcgaagaTGGCTACGAACATT 112 |||||| |||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 61 TGAAAGAGCCAGAGGGAGAAACAGTTGAATCTGAGAAAATCGAAGATGGCTACGAAGATT 120 Query 113 GGGATGATGGATTCTGCATATTTCGTCGGGAGATCGGAGATTCTGGCTTGGATTAACTCT 172 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 GGGATGATGGATTCTGCATATTTCGTCGGGAGATCGGAGATTCTGGCCTGGATTAACTCC 180 Query 173 ACTCTCCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCAGGCGCTGTTCATTGTCAG 232 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 ACTCTCCAACTCAATCTCTCCAAAGTTGAAGAGGCTTGTTCAGGCGCTGTTCATTGTCAG 240 Query 233 CTGATGGATTCGGTGCATCCTGGGACTGTTCCGATGCACAAGGTTAACTTTGATGCGAAG 292 || ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 241 CTCATGGATTCGGTACATCCTGGAACTGTTCCGATGCATAAGGTTAACTTTGATGCCAAG 300 Query 293 AGTGAATATGAGATGATTCAGAACTATAAGGTTCTTCAGGATGTGTTTAATAAACTCAAG 352 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 AGTGAGTATGAGATGATTCAGAACTATAAGGTTCTTCAGGATGTGTTTAATAAGCTCAAG 360 Query 353 ATCACTAAGCACATCGAAGTGAGCAAACTCGTTAAGGGAAGGCCATTGGATAACTTGGAG 412 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATCACTAAGCACATTGAAGTGAGCAAACTCGTTAAGGGAAGGCCATTGGATAACTTGGAG 420 Query 413 TTTATGCAGTGGATGAAAAAGTACTGTGATTCTGTTAATGGAGGCCAGCATAATTACCAT 472 |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTTATGCAATGGATGAAGAAGTACTGTGATTCTGTTAATGGAGGCCAGCATAATTACCAC 480 Query 473 GCACTTGAGAGAAGGGAAGCCAGCAAAGGAGGTAAAGAAGCAACGAAGAGAGCT---GCA 529 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 481 GCACTTGAGAGAAGAGAAGCCAGCAAAGGAGGTAAAGAAGCAACCAAGAGAGCTGCAGCA 540 Query 530 GCTACACAACAATCAGGCAAGAGTTCGTCTTCTTCAGCTCCACCTCGACCTTCATCTTCA 589 ||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||| Sbjct 541 GCTACACAACAATCAGGCAAGGGTTCTTCTTCTTCAGCTGCACCTAGACCTTCATCTTCA 600 Query 590 AATGGAACCCGTAAGCATGAGCCACAATCCAACAACACCGGTACTCACCATTCTTCAACT 649 |||||||||||||| ||| | || | | ||| || | | ||| | ||| Sbjct 601 AATGGAACCCGTAAACAT--G----AA--C--C-ACA---GT-C-CTCCA----AC-ACT 639 Query 650 GGGAATCACCACCACTCTTCAAAACCATCAGCTAAACAATCTAAACCAGTGCCTGCTTAT 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 GGGAATCACCACCACTCTTCAAAACCATCAGCTAAACAATCTAAACCAGTGCCTGCTTAT 699 Query 710 GATGAAAAGATCACAGAACTGAAACTTTACATTGACAGCTTAGAGAAAGAGAGAGATTTC 769 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 700 GATGAAAAGATCACAGAACTGAAACTCTACATAGACAGCTTGGAGAAAGAGAGAGATTTC 759 Query 770 TATTTCTCTAAACTCAGAGATGTAGAGATTCTCTGTCAAAACCCAGACACAGAGCACTTA 829 ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 760 TATTTCTCTAAACTCCGAGATGTAGAGATTCTCTGCCAAAACCCAGACACAGAGCACTTA 819 Query 830 CCTCTTGTTGGTTCCATAAAAAGAATCCTATACGCAGCAGATGGAGAAGACGTTGGAGCA 889 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 820 CCTCTTGTTGGTTCCATAAAAAGAATCCTATATGCAGCAGATGGAGAAGACGTTGGAGCA 879 Query 890 GCAG-AGA-C-A---CAGACTTTGAGTCCCATTGCTGAAGGATCAGAAGAGAGAAGGAAC 943 |||| ||| | | ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 880 GCAGCAGAACCAATACAGACTTTGAGTCCCATTGCTGAAGGATCAGAAGAAAGAAGGAAC 939 Query 944 AGTGTAACAGAGTCGCAGAAGAGGAAGCTCATAGTGAATCTCGACGTAGATGTTGCAGCG 1003 ||||||| |||||| |||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 940 AGTGTAATAGAGTCACAGAAGAGGAAGCTCATAGTGAATCTCGACGTCGATGCTGCAGCG 999 Query 1004 ATTACAACACTCTCTCCAAGACAACGCCTTTCTGATGCTTCTGATGTCAAATGCAGTGGT 1063 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 ATTACAACACTCTCTCCGAGACAACGCCTTTCTGATGCTTCTGATGTCAAATGCAGTGGT 1059 Query 1064 TCATCTCCTCTCTTGACCTGCTGAAATCAGAGTTAGCTA-T-A-TA-A-TACTCTCTTAT 1118 ||||||||||||||||||| ||||||| ||||||| ||| | | || | ||||||||||| Sbjct 1060 TCATCTCCTCTCTTGACCTACTGAAATGAGAGTTAACTACTTACTATAATACTCTCTTAT 1119 Query 1119 GAAAACATTCTCTCTCAGAGAATCTGTTCTATGTTTGaaaaaaaTTCCCT-ATCCCTCCT 1177 |||| ||||||||||||||||| || ||||||||||||||| ||||||| | |||| || Sbjct 1120 AAAAAGATTCTCTCTCAGAGAATTTGCTCTATGTTTGAAAAAGATTCCCTGA-CCCTTCT 1178 Query 1178 TATAAACATACTCTACTAGTACTCTGTTGAAAATATCATTGTTGTGATGTTTTGTGGTCC 1237 |||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1179 TATAAACATAGT--ACTAATACTCTGTTGAAAATATCATTGTTGTGATGTTTTGTGATCC 1236 Query 1238 TTAT 1241 |||| Sbjct 1237 TTAT 1240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47272417080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5