BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67270.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496873 jgi|Araly1|496873|fgenesh2_kg.8__2689__AT5G67270.1 1742 0.0
> Ahg496873 jgi|Araly1|496873|fgenesh2_kg.8__2689__AT5G67270.1
Length=1240
Score = 1742 bits (943), Expect = 0.0
Identities = 1165/1264 (92%), Gaps = 47/1264 (4%)
Strand=Plus/Plus
Query 1 ATTTTCTATCTTTGTTCTCTTCTCCTAATTTCaaaagagccgttagagagagacagatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATTTTCTATCTTTGTTCTCTTCTCCTAATTTCAAAAGAGCCGTTAGAGAGAGAGAGATCG 60
Query 61 agaaagaaccagagagagaaac--------ctgagaaaatcgaagaTGGCTACGAACATT 112
|||||| |||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 61 TGAAAGAGCCAGAGGGAGAAACAGTTGAATCTGAGAAAATCGAAGATGGCTACGAAGATT 120
Query 113 GGGATGATGGATTCTGCATATTTCGTCGGGAGATCGGAGATTCTGGCTTGGATTAACTCT 172
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GGGATGATGGATTCTGCATATTTCGTCGGGAGATCGGAGATTCTGGCCTGGATTAACTCC 180
Query 173 ACTCTCCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCAGGCGCTGTTCATTGTCAG 232
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTCCAACTCAATCTCTCCAAAGTTGAAGAGGCTTGTTCAGGCGCTGTTCATTGTCAG 240
Query 233 CTGATGGATTCGGTGCATCCTGGGACTGTTCCGATGCACAAGGTTAACTTTGATGCGAAG 292
|| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 241 CTCATGGATTCGGTACATCCTGGAACTGTTCCGATGCATAAGGTTAACTTTGATGCCAAG 300
Query 293 AGTGAATATGAGATGATTCAGAACTATAAGGTTCTTCAGGATGTGTTTAATAAACTCAAG 352
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AGTGAGTATGAGATGATTCAGAACTATAAGGTTCTTCAGGATGTGTTTAATAAGCTCAAG 360
Query 353 ATCACTAAGCACATCGAAGTGAGCAAACTCGTTAAGGGAAGGCCATTGGATAACTTGGAG 412
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCACTAAGCACATTGAAGTGAGCAAACTCGTTAAGGGAAGGCCATTGGATAACTTGGAG 420
Query 413 TTTATGCAGTGGATGAAAAAGTACTGTGATTCTGTTAATGGAGGCCAGCATAATTACCAT 472
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTATGCAATGGATGAAGAAGTACTGTGATTCTGTTAATGGAGGCCAGCATAATTACCAC 480
Query 473 GCACTTGAGAGAAGGGAAGCCAGCAAAGGAGGTAAAGAAGCAACGAAGAGAGCT---GCA 529
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 481 GCACTTGAGAGAAGAGAAGCCAGCAAAGGAGGTAAAGAAGCAACCAAGAGAGCTGCAGCA 540
Query 530 GCTACACAACAATCAGGCAAGAGTTCGTCTTCTTCAGCTCCACCTCGACCTTCATCTTCA 589
||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||
Sbjct 541 GCTACACAACAATCAGGCAAGGGTTCTTCTTCTTCAGCTGCACCTAGACCTTCATCTTCA 600
Query 590 AATGGAACCCGTAAGCATGAGCCACAATCCAACAACACCGGTACTCACCATTCTTCAACT 649
|||||||||||||| ||| | || | | ||| || | | ||| | |||
Sbjct 601 AATGGAACCCGTAAACAT--G----AA--C--C-ACA---GT-C-CTCCA----AC-ACT 639
Query 650 GGGAATCACCACCACTCTTCAAAACCATCAGCTAAACAATCTAAACCAGTGCCTGCTTAT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GGGAATCACCACCACTCTTCAAAACCATCAGCTAAACAATCTAAACCAGTGCCTGCTTAT 699
Query 710 GATGAAAAGATCACAGAACTGAAACTTTACATTGACAGCTTAGAGAAAGAGAGAGATTTC 769
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 700 GATGAAAAGATCACAGAACTGAAACTCTACATAGACAGCTTGGAGAAAGAGAGAGATTTC 759
Query 770 TATTTCTCTAAACTCAGAGATGTAGAGATTCTCTGTCAAAACCCAGACACAGAGCACTTA 829
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 760 TATTTCTCTAAACTCCGAGATGTAGAGATTCTCTGCCAAAACCCAGACACAGAGCACTTA 819
Query 830 CCTCTTGTTGGTTCCATAAAAAGAATCCTATACGCAGCAGATGGAGAAGACGTTGGAGCA 889
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 820 CCTCTTGTTGGTTCCATAAAAAGAATCCTATATGCAGCAGATGGAGAAGACGTTGGAGCA 879
Query 890 GCAG-AGA-C-A---CAGACTTTGAGTCCCATTGCTGAAGGATCAGAAGAGAGAAGGAAC 943
|||| ||| | | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 880 GCAGCAGAACCAATACAGACTTTGAGTCCCATTGCTGAAGGATCAGAAGAAAGAAGGAAC 939
Query 944 AGTGTAACAGAGTCGCAGAAGAGGAAGCTCATAGTGAATCTCGACGTAGATGTTGCAGCG 1003
||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 940 AGTGTAATAGAGTCACAGAAGAGGAAGCTCATAGTGAATCTCGACGTCGATGCTGCAGCG 999
Query 1004 ATTACAACACTCTCTCCAAGACAACGCCTTTCTGATGCTTCTGATGTCAAATGCAGTGGT 1063
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 ATTACAACACTCTCTCCGAGACAACGCCTTTCTGATGCTTCTGATGTCAAATGCAGTGGT 1059
Query 1064 TCATCTCCTCTCTTGACCTGCTGAAATCAGAGTTAGCTA-T-A-TA-A-TACTCTCTTAT 1118
||||||||||||||||||| ||||||| ||||||| ||| | | || | |||||||||||
Sbjct 1060 TCATCTCCTCTCTTGACCTACTGAAATGAGAGTTAACTACTTACTATAATACTCTCTTAT 1119
Query 1119 GAAAACATTCTCTCTCAGAGAATCTGTTCTATGTTTGaaaaaaaTTCCCT-ATCCCTCCT 1177
|||| ||||||||||||||||| || ||||||||||||||| ||||||| | |||| ||
Sbjct 1120 AAAAAGATTCTCTCTCAGAGAATTTGCTCTATGTTTGAAAAAGATTCCCTGA-CCCTTCT 1178
Query 1178 TATAAACATACTCTACTAGTACTCTGTTGAAAATATCATTGTTGTGATGTTTTGTGGTCC 1237
|||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1179 TATAAACATAGT--ACTAATACTCTGTTGAAAATATCATTGTTGTGATGTTTTGTGATCC 1236
Query 1238 TTAT 1241
||||
Sbjct 1237 TTAT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5