BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67280.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496872 jgi|Araly1|496872|fgenesh2_kg.8__2688__AT5G67280.1 3731 0.0
Ahg936568 jgi|Araly1|936568|scaffold_500759.1 309 6e-83
Ahg897165 jgi|Araly1|897165|Al_scaffold_0005_1131 292 6e-78
Ahg944134 jgi|Araly1|944134|scaffold_700363.1 252 1e-65
Ahg343889 jgi|Araly1|343889|fgenesh1_pg.C_scaffold_4000231 246 5e-64
> Ahg496872 jgi|Araly1|496872|fgenesh2_kg.8__2688__AT5G67280.1
Length=2467
Score = 3731 bits (2020), Expect = 0.0
Identities = 2330/2479 (94%), Gaps = 23/2479 (1%)
Strand=Plus/Plus
Query 1 ACAATCACATGGCCTTTTCAAAAAATCAATCTTTTAGTTCTCTATCGATGCGTAGGCTTG 60
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||
Sbjct 1 ACAATCACATGGCCTTTTCAAAAAACCAATCCTTTAGTTCTCTATCGATGCGTAAGCCTG 60
Query 61 AAGCATGATGACGACAGTCGCCGCCGATCTCCACCGTTATCTTTTCCTG--ATTACCGTT 118
||| | |||||||||||||||||||||||||| |||||||| ||| ||| |||||||||
Sbjct 61 AAGAACGATGACGACAGTCGCCGCCGATCTCCGCCGTTATC-TTT-CTGTAATTACCGTT 118
Query 119 TT-TCTTTTCTTCCTCTGCGACAAAACCTCTCTTGCTCTGACCACAGACGGTGTTCTTCT 177
|| || ||| || | |||||| || | |||||||||||| ||||||||||||||||||
Sbjct 119 TTGTC-CTTCCTCTTTTGCGACCAATCAGCTCTTGCTCTGAACACAGACGGTGTTCTTCT 177
Query 178 TCTCTCTTTCCGTTACTCAATCGTTGACGATCCTCTTTACGTTTTTCGGAGCTGGAGATT 237
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 178 TCTCTCTTTCCGTTACTCAATCGTCGACGATCCTCTTTCCGTTTTACGGAGCTGGAGATT 237
Query 238 CGACGACGAGACTCCTTGCTCTTGGCGTGGTGTCACGTGCGATGCATCTTCCCGGCACGT 297
|| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 238 AGAAGACGAGACCCCTTGCTCTTGGCGAGGTGTCACGTGCGATGAATCTTCCCGGCACGT 297
Query 298 GACTGTTCTGTCACTTCCAAGCTCGAACCTTACCGGCACACTACCTTCAAATTTGGGTTC 357
||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 298 GACTGTTCTTTCACTTCCGAGCTCGAACCTTACCGGTACACTTCCTTCAAATTTAGGTTC 357
Query 358 ACTCAATTCACTTCAAAGACTTGATCTTTCCAACAATTCCATCAATGGGTCTTTCCCGGT 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 358 ACTCAATTCACTTCAAAGACTTGATCTTTCCAACAATTCGATCAATGGGTCTTTCCCTGT 417
Query 418 TTCGCTTCTCAACGCGACGGAGCTTCGATTTCTTGATCTGTCCGATAATCACATCTCCGG 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 TTCGCTTCTCAACGCGACGGAGCTTCGATTTCTTGATCTGTCCGATAATCACATTTCCGG 477
Query 478 TGCACTACCGGCGAGTTTTGGCGCGCTTTCGAACCTCCAAGTGTTGAATCTCTCCGATAA 537
| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 478 CGAACTACCGTCGAGTTTTGGCGCGCTTTGGAACCTCAAAGTGTTGAATCTCTCCGATAA 537
Query 538 TTCCTTCGTCGGCGAATTACCGAACACATTAGGATGGAACCGGAACTTAACGGAGATTTC 597
||||||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||
Sbjct 538 TTCCTTCGTCGGCGAGTTACCGAAGACATTAGGTTGGAATCGGAACTTAACGGTGATTTC 597
Query 598 ACTTCAGAAAAACTATTTATCCGGCGGGATTCCGGGAGGTTTTAAGTCGACGGAGTATCT 657
||| |||| || ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 598 ACTGAAGAACAATTATTTCTCCGGCCAGATTCCGGGAGGTTTTAAGTCGACGGAGTATCT 657
Query 658 TGATCTCTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTCT 717
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 658 TGACCTGTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTTT 717
Query 718 ACGCTATTTCAACGCTTCGTACAACAGAATCTCCGGCGAGATTCCGTCAGGTTTCGCCGA 777
|||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct 718 ACGCTATTTCAACGTTTCGTTCAACAGAATCTCCGGCAAGATTCCATCAGGTTTCGCCGA 777
Query 778 CGAAATCCC-GGAAGACGCCACCGTTGATCTCTCATTCAACCAACTTACAGGTCAAATCC 836
|||||||| | || |||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 778 TGAAATCCCAGCAA-ACGCCACCGTCGATCTCTCATTCAACCAGCTCACGGGTCAAATCC 836
Query 837 CGGGTTTTCGGGTTCTCGATAACCAAGAATCCAACTCTTTCTCCGGTAACCCGGGTCTCT 896
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 837 CTGGTTTTCGGGTTCTCGATAACCAAGAATCTAACTCTTTCTCCGGTAACCCGGGTCTCT 896
Query 897 GCGGATCCGA-CCATGCAAAACACCCTTGTCGTGACGGTGAAGCAACCTCTCCACCTCCA 955
|||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 GCGGATCCAACCCA-GCAAAACACCCTTGCCGTGACGGTGAAGCAACCTCTCCACCTCCA 955
Query 956 TCGCCGACTCCAAATTCTCCTCCTGCATTAGCTGCTATACCAAATACTATTGGCTTAACC 1015
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 TCGCCGACTCCAAATTCCCCTCCTGCATTAGCTGCTATACCAAATACCATTGGCTTAACC 1015
Query 1016 AATCACCCAATTAGCTCCAAAACCGGTCCGAAATCAAAATGGGATCATAAACCGGTGCTT 1075
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1016 AATCACCCAATTAGCTCCAAAACCGGTCAAAAATCAAAATGGGATCATAAACCGGGGCTT 1075
Query 1076 ATCATTGGCATTGTTGTCGGTGACTTAGCCGGTTTAGCAATCCTCGGGATTGTGTTTTTC 1135
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 ATCATTGGCATCGTTGTCGGTGACTTAGCCGGTTTAGCTATCCTCGGGATTGTGTTTTTC 1135
Query 1136 TACATTTACCAGTCGAGAAAACGGAAGACCGTAACGGCTACGTCAAAATGGTCCACGTCA 1195
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TACATTTACCAGTCGAGAAAAAGGAAGACCGTAACGGCTACGTCAAAATGGTCCACGTCA 1195
Query 1196 TCAACAGATTCCAAGGTCTCAAAATGGTACTGTTTACGCAAATCCGTTTACGTTGACGGT 1255
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 TCAACAGATTCCAAAGTCTCAAAATGGTACTGTCTACGCAAATCCGTTTACGTTGACGGT 1255
Query 1256 GACTGCGAAGAAGAAGAAGAGGAATCTGAGACATCGGAATCCGAATCCGACGAAGAGAAC 1315
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1256 GACTGTGAAGACGAAGAAGAAGAATCCGAGACATCGGAATCCGAATCCGACGAAGAGAAC 1315
Query 1316 CCGGTCGGACCAAATCGACGGTCAGGATTAGACGATCAAGa-aaaaaaGGGAACGTTAGT 1374
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1316 CCGGTCGGACCAAATCGACGGTCAGGATTAGACGATCAAGACAAGAAA-GGAACGTTAGT 1374
Query 1375 GAATCTCGATTCAGAGAAAGAGCTTGAAATCGAAACGCTTCTCAAAGCATCAGCTTATAT 1434
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1375 AAATCTCGATTCAGAGAAAGAACTTGAAATCGAAACGCTTCTCAAAGCTTCAGCTTATAT 1434
Query 1435 TTTGGGAGCCACCGGTTCGAGCATAATGTATAAAGCGGTGCTTCAAGACGGAACAGCTGT 1494
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1435 TTTGGGAGCCACCGGTTCGAGCATAATGTATAAAGCGGTTCTTCAAGACGGAACGGCTGT 1494
Query 1495 GGCGGTTCGACGAATAGCTGAATGCGGTTTAGACCGGTTTAGAGATTTCGAAGCTCAGGT 1554
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GGCGGTTCGACGTATAGCTGAATGCGGTTTAGACCGGTTTAGAGATTTCGAAGCTCAGGT 1554
Query 1555 TCGAGCCGTGGCTAAGTTAATACATCCAAACCTGGTACGAATTCGCGGTTTCTATTGGGG 1614
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1555 TCGAGCCGTGGCTAAGTTAATACATCAAAACCTGGTACGAATTCGAGGTTTCTATTGGGG 1614
Query 1615 ATCCGACGAGAAACTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGCTAACGCCCG 1674
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1615 AGCCGACGAGAAGCTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGCTAATGCCCG 1674
Query 1675 TTACCGGAAAGTGGGCTCCTCTCCTTGTCATTTACCTTGGGACGCTCGGCTCAAGATAGC 1734
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1675 TTACCGGAAAGTGGGCTCCTCTCCTTGTCATTTACCTTGGGAAGCTCGGCTCAAGATAGC 1734
Query 1735 AAAAGGCATAGCTCGCGGGCTAACATACGTACACGACAAGAAGTACGTGCATGGTAACCT 1794
|||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1735 AAAAGGTATAGCCCGTGGGCTAACATATGTACACGACAAGAAGTACGTGCATGGTAACCT 1794
Query 1795 CAAGCCTAGCAATATCCTTTTGGGCTTAGATATGGAGCCTAAAGTTGCGGATTTCGGTCT 1854
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1795 CAAGCCTAGTAATATCCTTTTGGGCTTAGATATGGAGCCTAAAGTTGCCGATTTCGGGCT 1854
Query 1855 TGAGAAGCTTTTGATTGGGGACATGAGTTATAGAACCGGTGGATCGGCTCCAATATTCGG 1914
|||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1855 TGAGAAGCTTTTGATTGGCGACATGAGTTATAGAGCTGGTGGATCGGCTCCTATATTCGG 1914
Query 1915 AAGCAAGAGATCCACAACGTCTCTTGAGTTTGGGCCGAGTCCAAGCCCAAGTCCAAGTTC 1974
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 AAGCAAGAGATCCACAACATCTCTTGAGTTTGGGCCGAGTCCAAGCCCAAGTCCAAGTTC 1974
Query 1975 AGTCGGGTTACCCTACAATGCTCCAGAATCTCTTCGGAGTATTAAGCCGAATTC-GAAAT 2033
|||||||||||| |||||||| || |||||||||||||| || |||||||| || |||||
Sbjct 1975 AGTCGGGTTACCTTACAATGCCCCGGAATCTCTTCGGAGCATAAAGCCGAA-TCAGAAAT 2033
Query 2034 GGGATGTGTACTCGTTCGGAGTTATTCTGCTTGAGCTACTAACGGGAAAGATCGTGGTGG 2093
|||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||
Sbjct 2034 GGGATGTGTACTCGTTCGGAGTTATTCTCCTGGAGTTACTTACGGGAAAGATCGTGGTGG 2093
Query 2094 TCGACGAGCTTGGACAGGTTAATGGGCTTGTGATTGATGACGGTGAGCGGGCAATTCGGA 2153
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TTGATGAGCTTGGACAGGTTAATGGGCTTGTGATTGATGACGGTGAGCGGGCAATTCGGA 2153
Query 2154 TGGCGGACTCTGCTATACGGGCTGAGTTAGAAGGCAAAGAAGAAGCTGTGTTGGCATGTT 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TGGCGGACTCTGCTATACGGGCTGAGTTAGAAGGCAAAGAAGAAGCTGTGTTGGCATGTT 2213
Query 2214 TGAAAATGGGCCTAGCTTGTGCGTCTCCAATACCACAGAGAAGGCCCAATATCAAAGAGG 2273
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2214 TGAAAATGGGCCTAGCTTGTGCATCTCCAATACCACAGAGAAGGCCCAATATCAAAGAGG 2273
Query 2274 CTTTGCAAGTTCTCGAGAGATTCCCTGTTCATTCTAGTCAACAGTAATGATAATAATTAA 2333
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2274 CTTTACAAGTTCTCGAGAGATTCCCTGTTCATTTTAGTCAACAGTAATGATAATAATTAA 2333
Query 2334 GACCAAGAAA-GAGTTAAATAACTTGACTGTGTGTACTTAGAGTT-AGATTGATAGGCAA 2391
|||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2334 GACCAAGAAAAGACTTAAATAACTTGACTGTGTGTACTTAGAGTTTAGATTGATAGGCGA 2393
Query 2392 GTTTG--ATCTTCTTTTGTGGCTTCTGATTTTGAATTTATTTTTGGTTATGATTTTAGTG 2449
|||| || |||||||||||||||||||||||||||||| ||||||| | | ||||
Sbjct 2394 GTTTTTTATGTTCTTTTGTGGCTTCTGATTTTGAATTTATATTTGGTTTT-A----AGTG 2448
Query 2450 ACAATTATATCTCTGGGCT 2468
||||| |||||||||||||
Sbjct 2449 ACAATAATATCTCTGGGCT 2467
> Ahg936568 jgi|Araly1|936568|scaffold_500759.1
Length=416
Score = 309 bits (167), Expect = 6e-83
Identities = 200/216 (93%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 605 AAA-AACTATTTATCCGGCGGGATTCCGGGAGGTTTTAAGTCGACGGAGTATCTTGATCT 663
||| || ||||| |||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct 174 AAACAATTATTTCTCCGGCCAGATTTCGGGAGGTTTCAAGTCGACGGAGTATCTTGATCT 233
Query 664 CTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTCTACGCTA 723
||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 234 GTCGTCAAATCTCATCAAAGGCTCGTTGCCGTCACGTTTCAGAGGGAATCGTTTACGCTA 293
Query 724 TTTCAACGCTTCGTACAACAGAATCTCCGGCGAGATTCCGTCAGGTTTCGCCGACGAAAT 783
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 294 TTTCAACGCTTCGAACAACAGAATCTCCGGCGAGATTCCGTCAGGTTTCGCCGATGAAAT 353
Query 784 CCCGGAAGACGCCACCGTTGATCTCTCATTCAACCA 819
||||||| |||||||||| |||||||||||||||||
Sbjct 354 CCCGGAAAACGCCACCGTCGATCTCTCATTCAACCA 389
> Ahg897165 jgi|Araly1|897165|Al_scaffold_0005_1131
Length=390
Score = 292 bits (158), Expect = 6e-78
Identities = 182/194 (94%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 626 ATTCCGGGAGGTTTTAAGTCGACGGAGTATCTTGATCTCTCGTCAAATTTGATCAAAGGC 685
||| |||| ||||| ||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 190 ATTTCGGGTGGTTTCAAGTCGACGGAGTATCTTGATCTGTCGTCAAATCTCATCAAAGGC 249
Query 686 TCGTTGCCGTCACATTTCAGAGGGAATCGTCTACGCTATTTCAACGCTTCGTACAACAGA 745
||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 250 TCGTTGCCGTCACGTTTCAGAGGGAATCGTTTACGCTATTTCAACGCTTCGAACAACAGA 309
Query 746 ATCTCCGGCGAGATTCCGTCAGGTTTCGCCGACGAAATCCCGGAAGACGCCACCGTTGAT 805
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 310 ATCTCCGGCGAGATTCCGTCAGGTTTCGCCGATGAAATCCCGGAAAACGCCACCGTCGAT 369
Query 806 CTCTCATTCAACCA 819
||||||||||||||
Sbjct 370 CTCTCATTCAACCA 383
> Ahg944134 jgi|Araly1|944134|scaffold_700363.1
Length=2342
Score = 252 bits (136), Expect = 1e-65
Identities = 385/501 (77%), Gaps = 34/501 (7%)
Strand=Plus/Plus
Query 1387 AGAGAAAGAGCTTGAAATCGAAACGCTTCTCAAAGCATCAGCTTATATTTTGGGAGCCAC 1446
|||||||||| | || || || || || || || || |||||||||||||| ||||||||
Sbjct 1328 AGAGAAAGAGATGGAGATTGAGACTCTGCTTAAGGCTTCAGCTTATATTTTAGGAGCCAC 1387
Query 1447 CGGTTCGAGCATAATGTATAAAGCGGTGCTTCAAGACGGAACAGCTGTGGCGGTTCGACG 1506
|||||||| |||||||||||||| || ||| ||||||||| | | | |||||||| ||
Sbjct 1388 TGGTTCGAGTATAATGTATAAAGCCGTTCTTGAAGACGGAAGGGTTTTCGCGGTTCGTCG 1447
Query 1507 AATAGCTGA-ATGCGG-TT---T-AG-ACCGGTTT-AGAGATTTCGAAG-CTCAGGTTCG 1557
| | ||| | ||| || | || ||||||| || ||||| | || | || ||||
Sbjct 1448 GCTCGGTGAGA-ACGGTTTGAATCAGCGCCGGTTTAAG-GATTTTG-AGTCGCACATTCG 1504
Query 1558 AGCC-GTGGCTAAGTTAATACATCCAAACCTGG-TACGAATTCGCGGTTTCTATTGGGGA 1615
|||| |||| || || | || || || ||| || || || | || |||||||||||
Sbjct 1505 AGCCATTGGC-AAATTGGTTCACCCGAATTTGGTTA-GACTTTGTGGGTTCTATTGGGG- 1561
Query 1616 T-CCGACGAGAAACTT-GTCATTTACGATTTTGTCCCTAACGGCAGCCTCG-CTAACGCC 1672
| ||||||||||| || |||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1562 TACCGACGAGAAA-TTGGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGTC-AACCCC 1619
Query 1673 CGTTACCGGAAAGT-GG-GC-TCCTCT-C-CT-TGTCATTTACCTTGGGACGCTCGGCTC 1726
|||||||| |||| || | || ||| | | | ||| |||| ||||| ||||||||
Sbjct 1620 CGTTACCGAAAAGGAGGAGGGTCTTCTTCACCGTATCACCTACCATGGGAAACTCGGCTC 1679
Query 1727 AAGATAGCAAAAGGCATAGCTCGCGGGCTAACATA-CGTACACGACAAGAAGTACGTGCA 1785
||||||||||| ||||| || || ||||| | || | | ||||| |||||| | |||||
Sbjct 1680 AAGATAGCAAAGGGCATTGCACGTGGGCTGGCTTATC-TCCACGAGAAGAAGCATGTGCA 1738
Query 1786 TGGTAACCTCAAGCCTAGCAATATCCTTTTGGGCT-TAGATATGGAGCCTAAAGTTG-CG 1843
||| ||| | |||||||| || || ||||||||| | || |||||||| ||| | | ||
Sbjct 1739 TGGAAACTTGAAGCCTAGTAACATACTTTTGGGCCAT-GACATGGAGCCCAAAATAGGCG 1797
Query 1844 GATTTCGGTCTTGAGAAGCTT 1864
||||||| || |||| ||||
Sbjct 1798 -ATTTCGGACTCGAGAGGCTT 1817
> Ahg343889 jgi|Araly1|343889|fgenesh1_pg.C_scaffold_4000231
Length=2310
Score = 246 bits (133), Expect = 5e-64
Identities = 361/467 (77%), Gaps = 31/467 (7%)
Strand=Plus/Plus
Query 1387 AGAGAAAGAGCTTGAAATCGAAACGCTT-CTCAAAGCATCAGCTTATATTTTGGGAGCCA 1445
||||||||| |||||| | ||||| || || ||||| || ||||| |||||||||||||
Sbjct 1320 AGAGAAAGAACTTGAAGTTGAAAC-TTTGCTTAAAGCTTCTGCTTACATTTTGGGAGCCA 1378
Query 1446 CCGGTTCGAGCATAATGTATAAAG-CGGTGCTTCAAGACGGAACAGCTGTGGCGGTTCGA 1504
|||||||||| |||||||| ||| |||| ||| | || || || | | | ||||||||
Sbjct 1379 CCGGTTCGAGTATAATGTA-CAAGACGGTTCTTGAGGATGGGACGGTTCTTGCGGTTCGT 1437
Query 1505 CGAATAGCTGA-ATGCGGTTT-AG------A--CCGGTTT-AGAGA-TTTCGAAGCTCAG 1552
|| ||| ||| | |||||| || | ||||||| || || ||| || || ||
Sbjct 1438 CGGTTAGGTGAGA-ACGGTTTAAGTCAACAACGCCGGTTTAAG-GACTTT-GAGGCACAT 1494
Query 1553 GTTCGAGC-CGTGGCTAAGTTAATACATCCAAACCTGGTACGAATTCGCGGTTTCTATTG 1611
||||||| ||| ||| | | || || || |||| || | || || ||||||||
Sbjct 1495 ATTCGAGCTATTGG-TAAACTGGTTCACCCGAATTTGGTTCGTCTCCGTGGATTCTATTG 1553
Query 1612 GGG-ATCCGACGAGAAACTT-GTCATTTACGATTTTGTCCCTAACGGCAGCCTCG-CTAA 1668
||| | ||||||||||| || ||||||||||||||||||||||||||||| |||| | ||
Sbjct 1554 GGGCA-CCGACGAGAAA-TTGGTCATTTACGATTTTGTCCCTAACGGCAGTCTCGTC-AA 1610
Query 1669 CGCCCGTTACCGGAAAGT-GGGCTCCTCTCCTTGTCATTTACCTTGGGACG-CTCGGCTC 1726
|||||||||| |||||| ||| || || || || |||||||| ||||| | ||||||||
Sbjct 1611 CGCCCGTTACAGGAAAGGAGGG-TCGTCGCCGTGCCATTTACCATGGGA-GACTCGGCTC 1668
Query 1727 AAGATAGCAAAAGGCATAGCTCGCGGGCTAACATACGTACACGACAAGAAGTACGTGCAT 1786
|||||||| ||||| | ||||| ||||| | ||| | ||||||||||| | |||||
Sbjct 1669 AAGATAGCGAAAGGTTTGGCTCGTGGGCTTGCTTACCTCCACGACAAGAAACATGTGCAC 1728
Query 1787 GGTAACCTCAAGCCTAGCAATATCCTTTTGGGCTTAGATATGGAGCC 1833
|||||| | || ||||| || || ||||||||| ||||||||||||
Sbjct 1729 GGTAACTTGAAACCTAGTAACATACTTTTGGGCCAAGATATGGAGCC 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5