BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67290.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496871 jgi|Araly1|496871|fgenesh2_kg.8__2687__AT5G67290.1 2019 0.0
> Ahg496871 jgi|Araly1|496871|fgenesh2_kg.8__2687__AT5G67290.1
Length=1507
Score = 2019 bits (1093), Expect = 0.0
Identities = 1386/1520 (91%), Gaps = 49/1520 (3%)
Strand=Plus/Plus
Query 2 AAAAGATCAGCCCAAAAAGAAACTAAGCCCAATAAATA-ATTTCTAACTAACGTGTGGAC 60
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 AAAAGATCAGCCCAAAAAGAAACTAAGCCCAATAAATAGTTTTCTAACAAACGTGTGGAC 60
Query 61 TCGGTGAGTCATCATCTATCTCATCTCGGTGATGGCGGTGATCTCATCGTTATTATTCCC 120
|||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TCGGTGAG---TCATCTACCTCATCTCGGTAATGGCGGTGATCTCATCGTTATTATTCCC 117
Query 121 TCCGGTGTTAACCCGACGAACAATCACGATCTGCTCCAACTCATCGAAATCAATGGCGGC 180
|||| |||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 118 TCCGACGTTATCCCGACGAACAATCACGATCTG--------C-TCGAAATCAATGGCGGC 168
Query 181 TAAAAAACAAATCGGTGAAGAAACCTCGAAGCGGGTCTTTGTATGCGGCGGTGGAGTAAT 240
||||| ||||||| || ||||||||||||||||||| ||||||||||||| || |||||
Sbjct 169 GAAAAACCAAATCGATGGAGAAACCTCGAAGCGGGTCGTTGTATGCGGCGGCGGCGTAAT 228
Query 241 CGGCGTCTGTACTGCTTATTTCCTCGCCAAGAAAGGAATCGCCGTCACTCTCGTCGAGAA 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CGGCGTCTGCACTGCTTATTTCCTCGCCAAGAAAGGAATCGCCGTCACTCTCGTCGAGAA 288
Query 301 ATCAGCCGTCGCGTGCGCTGCTTCCGGTAAAGCCGGTGGATTTCTCGCTTTCGATTGGTG 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 289 ATCAGCCGTCGCGTGCGCTGCTTCCGGTAAAGCTGGTGGATTTCTCGCTTTCGATTGGTG 348
Query 361 CGATGGAAGTCCTGTTGCGCATTTAGCACGCGCGAGCTTTAAACTCCATCGATCGCTCGC 420
|||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||| |
Sbjct 349 CGATGGAAGTCCTGTTGCGCCTTTAGCACGCGCGAGCTTTAACCTTCATCGATCACTCTC 408
Query 421 TGAGGAGCTAAACGGTGTCGAATCGTACGGATACAGAGCACTCACGACTCTTAGCGTCAC 480
|||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 409 CGAGGAGCTAAACGGCGTCGAATCGTACGGGTACAGACCACTCACGACTCTTAGCCTCAC 468
Query 481 CGTGACGGAATCAAAACCCGGTTCCGGCGGTTTGGGATTACCGGATTGGGTCAACGGCCC 540
|||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 469 CGTGACGGAAGCAACGCCAGGTTCCGGCGGTTTGGGTTTACCGGATTGGGTCAACGGCCC 528
Query 541 AGCTAAAAGCACATCAACGATTGGTACAACTCAAACAACAGCACAAGTGCATCCTCAACT 600
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 529 AGCTAAAAGCCCATCAACGATTGGTACGACTCAAACAACAGCACAAGTGCATCCACAGCT 588
Query 601 TTTTACTCGGAAGCTTTTATCGACGGCGA-GAGAGAAGTACGGTGTTGAGGTTGTGATCG 659
||| || |||||||| ||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 589 TTTCACACGGAAGCTGTTATCGACGGCGACG-GAGAAGTACGGTGTTGAGGTTGTTATCG 647
Query 660 GGAAATTAGAAGAGGTGAGAGTGGAATCAGGTA-GAGTTAACTCTGTAGTGCTTGAAGGT 718
||||||| ||||||||||||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct 648 GGAAATTGGAAGAGGTGAGAGTGGAATCAGG-ACGAGTTGACTCTATAGTGCTTGAAGGT 706
Query 719 GGGAGAGTTATAGACACTGACGTGGTGGTTCTGGCGATGGGTCCATGGTCGAGTAAATTT 778
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 707 GGGAGAGTTATAGACACTGATGCGGTGGTTCTGGCGATGGGTCCATGGTCGAGCAAATTT 766
Query 779 GAGCTGTTGTCTTCGATTTTTAGGGTTTATTGTACTAAAGCTCATAGCATTGTCTTGGAA 838
||| |||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||
Sbjct 767 GAGTTGTTGTCTTCGATTTTTAGGGTTTATGGTATTAAAGCTCACAGTATTGTCTTGGAA 826
Query 839 CCGAAGGAACCAAATGCTATAACACCTCATGCCCTGTTCTTAACTTATCGTCCTGCTCAT 898
|| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 827 CCCAAGGAACCAAATTCTATAACACCTCATGCCCTTTTCTTAACTTATCGTCCTGCTCAT 886
Query 899 GGTGGTGAAGCTTTGGACCCTGAAGTATACCCTCGTCCCACAGGTGAAGTGTACATATGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GGTGGTGAAGCTTTGGACCCTGAAGTATACCCTCGTCCCACAGGTGAAGTGTACATATGT 946
Query 959 GGAATGTCATCACAAGAAGAGGTACCTGATGATGCTGATCAGGTCACAAGCAATCCTGAA 1018
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 947 GGAATGTCATCACAAGAAGAAGTACCTGATGATCCAGATCAGGTCACAAGCAATCCTGAA 1006
Query 1019 TCGATCCAGGTTCTCAAGAGAGTTGCGAAAACAGTCTCGAGCTATCTAAACGAAGAAAAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TCGATCCAGGTTCTCAAGAGAGTTGCGAAAACAGTCTCGAGCTATCTAAACGAAGAAAAC 1066
Query 1079 GCTCTAGTGAAAGCAGAGCAAGCTTGTTTCTTGCCCAGCACAGAAGATGGAGTTCCTGTG 1138
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1067 GCTCTAGTGAAAGCAGAGCAAGCATGTTTCTTGCCCAGCACAGAAGATGGAGTTCCTGTG 1126
Query 1139 ATCGGAGAGATTCCAGGAATCAAGGGATGTTATGTAGGCACAGGGCATAGTTGTTGGGGG 1198
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1127 ATCGGAGAGATTCCAGGAATCAAGGGCTGTTATGTCGGCACAGGACATAGTTGTTGGGGG 1186
Query 1199 ATTCTTAATGGTCCAGCCACTGGTGCTGCTTTGGCTGAGCTTATTGTAGACGGTGTAGCC 1258
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1187 ATTCTTAATGGTCCAGCCACCGGTGCTGCATTGGCTGAGCTTATTGTAGACGGCGTAGCC 1246
Query 1259 ACAAGTGTTGATCTTAGCCGGTTTAGTCCTTCCCGGTTTAGCAAACGAAGATGAAGAGTA 1318
|| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1247 ACCAGTGTTGATCTTAGCCGGTTTAGTCCTTCCCGGTTTATCAAGCGAAGATGAAGAGTA 1306
Query 1319 TAGTA-ATA-TAGA--GTGTTCGTTGAGATA-TCACATAAAAGCTACTCTGTTCTTTGAA 1373
||||| ||| || | |||| | || || || | | ||| | ||||||||||
Sbjct 1307 TAGTATATACTATATAGTGT--GAAAAGCTAATCTGTTCCATGCTG-T--GTTCTTTGAA 1361
Query 1374 GTCTAAGCAAACAGAATTGTGA--ACGAGGAATCTTAAAATGTGATAATGTGATACGTGA 1431
|| | |||| |||||||||||| |||||||||||| | | | | |||||| ||
Sbjct 1362 GTTTTAGCATACAGAATTGTGATTACGAGGAATCTT----T-T-A-A-TGTGAT---TG- 1409
Query 1432 TTGTATTTTGTAATCGTTGAGCATTTTAGTAGTACTGGTTAGATCTAAAGGCAAACT-C- 1489
| |||||||||||||||||||||||||| | || |||||||||||||| |||||| |
Sbjct 1410 T---ATTTTGTAATCGTTGAGCATTTTAGTCGAACCGGTTAGATCTAAAGCCAAACTGCA 1466
Query 1490 --T-AACTCAAAATGCTAAT 1506
| ||||||||||||||||
Sbjct 1467 AGTTAACTCAAAATGCTAAT 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5