BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67310.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496869 jgi|Araly1|496869|fgenesh2_kg.8__2685__AT5G67310.1 730 0.0
> Ahg496869 jgi|Araly1|496869|fgenesh2_kg.8__2685__AT5G67310.1
Length=1417
Score = 730 bits (395), Expect = 0.0
Identities = 491/537 (91%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 1010 GGAAGTTTTAAGGAAACTCAAAACGGAACTAAACGAGGTTT-CGAAAGAAGGGCGTGTGT 1068
||||| ||||| |||||| ||||||||| ||||| | |||| || |||||||||| |||
Sbjct 882 GGAAGGTTTAATGAAACTGAAAACGGAAGTAAACAACGTTTCCG-TAGAAGGGCGTCTGT 940
Query 1069 TTGAGGAATCAGATACTGGCAAGTGTCCCTATCTCAAC-AATGTGATCTCTGAGACTCTT 1127
| |||||||||||||| ||||||||||| ||||| ||| |||||||||||||| || ||
Sbjct 941 TGGAGGAATCAGATACCGGCAAGTGTCCGTATCT-AACAAATGTGATCTCTGAAACACTC 999
Query 1128 CGTTTGTTTCCGGCGGCGCCCTTACTTGTCCCACACGCTTCATCCACTGACTGTGAAGTC 1187
||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1000 CGTTTGTATCCGGCAGCGCCGTTACTTGTCCCACACGCTTCATCCGCTGACTGTGAAGTC 1059
Query 1188 GCTGGATTTGACATTCCACGTCGCACCTGGCTATTTATCAATGCGTGGGCTATTCAGAGA 1247
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 1060 GCTGGATTTGACATTCCACGTGGCACCTGGTTATTTATCAATGCGTGGGCTATTCAAAGA 1119
Query 1248 GACCCAAATGTAT-GG--GATGACCCAGAAACTTTCAAACCAGAGAGGTTTGAATCAGAG 1304
||||| || |||| || |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1120 GACCCGAAGGTATGGGATGATGACCCGGAAGCTTTCAAACCAGAGAGGTTTGAATCAGAG 1179
Query 1305 ACCCATCGTGGTAAGTTTCTGCCTTTCGGAATCGGTAGGAGAGCATGTCCTGGTATGGGC 1364
|| ||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1180 ACTCATCGTGGTAAGTATCTGCCTTTTGGAATCGGCAGAAGAGCATGTCCTGGTATGGGC 1239
Query 1365 CTGGCCCAACTAGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTCGATTGGGAG 1424
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1240 CTGGCCCAACTTGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTTGATTGGGAG 1299
Query 1425 AGAGACAATGACGTTGCCGTTGACATGTCGGAAGGAAAGGGTCTTACCATGCCCAAATCT 1484
|||||||||||||| || ||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 1300 AGAGACAATGACGTGGCAGTTGACATGTCGGAAGGAAGGGGTATTACCATGCCCAAAGCT 1359
Query 1485 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTCGACAAACTTGTTCTTTAA 1541
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1360 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTGGACAAAGTTGTTCTTTAA 1416
Score = 682 bits (369), Expect = 0.0
Identities = 534/611 (87%), Gaps = 22/611 (4%)
Strand=Plus/Plus
Query 63 ATTGATTTGTTTCTACTCGCTCTCATGGCCGGATTCATTGCAGTGGCGTATGTTTTCCGA 122
|||||||||| ||| ||||||||||| |||||||| || | ||||| ||| ||||||||
Sbjct 1 ATTGATTTGTCTCTCCTCGCTCTCATCGCCGGATTTATCACGGTGGCTTATCTTTTCCGA 60
Query 123 TCAAAGCAGAAGAAGAATTTACCGCCAA-ATCCTG-TAGGTTTTCCGGTGATCGGACACC 180
||||||||||||||||| | | || | ||| | | ||| || | |||||||
Sbjct 61 TCAAAGCAGAAGAAGAA--GA-AG--AATTTACTGCCAAG---TCCAGT-A--GGACACC 109
Query 181 TCCACCTTCTCAAAGAACCTGTTCACCGTTCCCTTCGTGACCTCTCTCGAAACCTCGGCA 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 110 TACACCTTCTCAAAGAACCTGTTCACCGTTCCCTTCGTGACCTCTCTCGAAACCTCCGCA 169
Query 241 TCGACGTGTTTATTCTCCGGCTAGGCTCTCGTCGAGCGGTGGTTGTAACGTCAGCTTCAG 300
|||||||||| |||| || ||||| || ||||||||||| ||||| ||||||||||| |
Sbjct 170 GCGACGTGTTTTTTCTACGCCTAGGTTCACGTCGAGCGGTTGTTGTGACGTCAGCTTCCG 229
Query 301 CTGCGGAGGAGTTCTTATCTCA-GCAAAACGATGTTGTTTTCGCCAACAGGCCTCTCGCT 359
|||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||
Sbjct 230 CTGCGGAGGAGTTCTTATCTCATG-AAAACGATGTCATCTTCGCCAACAGGCCTCTCGCT 288
Query 360 ACTTTAACTGAATACATGGGTTACAACAACACGCTGGTTAGCACAGCTCCGTACGGGGAG 419
| ||||||||||||||||||||||||| |||| | |||||| |||||| |||||| ||
Sbjct 289 AGTTTAACTGAATACATGGGTTACAACTGCACGATCGTTAGCGCAGCTCTGTACGGCGAA 348
Query 420 CATTGGCGCAGACTCCGCCGTTTCTGCGCCGTAGATATCTTGTCCACCGCTCGTCTCAGA 479
||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||
Sbjct 349 CATTGGCGCAGACTCCGCCGTTTCTGCGCCGTAGAGATCTTCTCCGCCGCTTGTCTCAGA 408
Query 480 GACTTTTCGGATATACGGAGAGACGAAGTGAGAGCTATGATTCGGAAGATCAACGTGGAA 539
|||| ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 409 GACTCTTCGGATATACGGAGAGACGAAGTGAGAGCTCTGCTTCGGAAGATCTACGTGGAA 468
Query 540 CTGGTAACATCAGGAGGCA--G--T--GTCAGATTGAAACTCCAGCCGTTTCTTTATGGG 593
||||||||||||||||| | | | ||||||||||||||||||||||| ||||||||
Sbjct 469 CTGGTAACATCAGGAGGAAATGACTTTGTCAGATTGAAACTCCAGCCGTTGCTTTATGGA 528
Query 594 CTTACGTATAACATCCTAATGAGCATGGTCGCTGGAAAACGAGAGGAAGACGAGGAAACT 653
||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 529 CTTACGTTTAACATCCTTATGAGCATAGTCGCCGGAAAACGAGAGGAAGACGAGGAAACG 588
Query 654 AAGGAAGTTCG 664
|||||| ||||
Sbjct 589 AAGGAA-TTCG 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5