BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67330.1
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1 2567 0.0
> Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1
Length=1793
Score = 2567 bits (1390), Expect = 0.0
Identities = 1659/1783 (93%), Gaps = 41/1783 (2%)
Strand=Plus/Plus
Query 79 GGCGGTTACCGGGAAATATGTCGGAGACTGATAGAGAGCGTCCGTTATTAGCATCGGAGG 138
|||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 46 GGCGGTTACCGGAAAACATGTCGGAGACCGATAGAGAGCGTCCGTTATTAGAATCGGAGG 105
Query 139 AGAGAGCTTATGAAGAAACCGAGAAAGTTCTCATAGTCGGAATCGACGAAGAAGAAGACG 198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AGAGGGCTTATGAAGAAACCGAGAAAGTTCTCATAGTCGGAATCGACGAAGAAGAAGACG 165
Query 199 CTGATTACGACGATGACCCCGGAAACTCTCCTAAATTCTCATGGAAGAAGCTTTGGCTAT 258
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTGATTACGACGACGACCCCGGAAACTCTCCTAAATTCTCATGGAAGAAGCTTTGGCTAT 225
Query 259 TCACTGGACCTGGTTTTCTGATGAGTATCGCTTTCCTCGATCCAGGTAATCTCGAGAGCG 318
|||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 226 TCACCGGACCTGGGTTTCTGATGAGTATCGCTTTCATCGATCCAGGTAATCTCGAGGGCG 285
Query 319 ATCTTCAAGCTGGAGCCATCGCTGGTTACTCTTTGATTTGGCTATTGATGTGGGCTACGG 378
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 286 ATCTTCAAGCTGGAGCCATCGCTGGCTACTCTTTGATTTGGCTCTTGATGTGGGCTACTG 345
Query 379 CGATTGGGCTTCTGATTCAACTTCTATCTGCCCGTCTCGGTGTGGCGACGGGTAGACATC 438
||||||| ||| |||| |||||||| ||||| ||||||||||| ||||| ||| | ||||
Sbjct 346 CGATTGGCCTTTTGATCCAACTTCTCTCTGCTCGTCTCGGTGTCGCGACTGGTCGGCATC 405
Query 439 TGGCGGAGTTGTGTCGAGAAGAGTATCCGACTTGGGCAAGGATGGTGCTTTGGATTATGG 498
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TGGCGGAGTTGTGTCGTGAAGAGTATCCGACTTGGGCAAGGATGGTGCTTTGGATTATGG 465
Query 499 CGGAGATTGCTTTGATCGGAGCTGATATTCAGGAAGTTATTGGTAGTGCTATAGCTATCA 558
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 466 CGGAGATTGCTTTGATCGGAGCTGATATTCAAGAAGTTATTGGTAGTGCTATAGCTATCA 525
Query 559 AGATCTTGTCTAATGGATTGGTTCCTCTTTGGGCTGGTGTTGTTATCACTGCTCTTGATT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AGATCTTGTCTAATGGATTGGTTCCTCTTTGGGCTGGTGTTGTTATCACTGCTCTTGATT 585
Query 619 GTTTCATCTTTCTATTTTTGGAGAATTATGGAATAAGGAAACTAGAAGCTGTGTTTGCTA 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GTTTCATCTTTCTATTTTTGGAGAATTATGGAATAAGGAAACTAGAAGCTGTGTTTGCTA 645
Query 679 TTTTGATTGCAACAATGGCTCTTGCATTTGCTTGGATGTTTGGTCAGACGAAACCCAGTG 738
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 646 TTTTGATTGCAACAATGGCTCTTGCATTTGCTTGGATGTTTGGTCAGACTAAACCCAGTG 705
Query 739 GAACTGAGCTCCTTGTTGGAGCATTGGTCCCTAAGCTTAGCTCCAGGACTATCAAACAAG 798
|||| || ||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 706 GAACCGAACTCCTTGTTGGAGCATTGGTCCCTAAGCTCAGTTCGAGGACTATCAAACAAG 765
Query 799 CTGTTGGTATTGTGGGATGTATTATCATGCCTCACAATGTGTTCTTGCATTCAGCACTTG 858
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CTGTTGGTGTTGTGGGATGTATTATCATGCCTCACAATGTGTTCTTGCATTCAGCACTTG 825
Query 859 TGCAATCCAGAGAAGTCGATCCGAAAAAGAGATTCCGGGTCAAAGAAGCTCTCAAGTACT 918
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 826 TGCAATCCAGAGAAGTCGATCCTAAAAAGAGATTCCGGGTCAAAGAAGCTCTCAAGTACT 885
Query 919 ACTCCATTGAATCCACTGGTGCTCTTGCGGTTTCTTTCATTATCAACGTCTTTGTGACCA 978
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 886 ACTCCATTGAATCTACTGGTGCTCTTGCGGTTTCCTTCATTATCAACGTCTTTGTGACCA 945
Query 979 CGGTGTTTGCCAAGTCGTTTTACGGGACAGAGATAGCGGACACCATCGGTCTTGCAAATG 1038
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 946 CGGTTTTTGCCAAGTCGTTTTACGGAACAGAGATAGCGGATACCATCGGTCTTGCAAATG 1005
Query 1039 CTGGACAGTACTTACAGGACAAATACGGGGGTGGGTTTTTCCCGATACTGTATATATGGG 1098
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1006 CTGGACAGTACTTACAGGACAAATACGGTGGCGGGTTTTTCCCGATACTGTATATATGGG 1065
Query 1099 CGATTGGAGTCTTAGCTGCTGGTCAGAGTAGTACCATCACAGGTACGTACGCCGGACAGT 1158
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1066 CGATTGGAGTCTTAGCTGCTGGTCAGAGTAGTACCATCACAGGTACTTACGCTGGACAGT 1125
Query 1159 TTATAATGGGAGGGTTCTTGAATCTCAAGATGAAGAAATGGGTTAGAGCCTTGATCACAA 1218
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1126 TTATAATGGGAGGGTTCTTGAATCTCAAGATGAAGAAATGGGTTAGAGCCTTAATCACAA 1185
Query 1219 GAAGCTGTGCAATCATACCAACAATGATCGTGGCGCTTGTCTTTGATTCATCGGATTCTA 1278
||||||| |||||||| ||||||||||| || |||||| |||||||||||||||||||||
Sbjct 1186 GAAGCTGCGCAATCATCCCAACAATGATTGTTGCGCTTTTCTTTGATTCATCGGATTCTA 1245
Query 1279 TGCTTGATGAGCTCAACGAATGGCTAAACGTTCTTCAATCGGTTCAGATCCCTTTCGCTG 1338
|||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1246 TGCTCGACGAGCTCAACGAATGGCTAAATGTTCTTCAATCAGTTCAGATCCCTTTCGCCG 1305
Query 1339 TGATCCCACTCCTTTGCTTGGTCTCCAATGAGCAAATCATGGGCAGTTTCAAAATTCAAC 1398
| ||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1306 TCATCCCTCTGCTCTGCTTGGTCTCCAATGACCAAATCATGGGCAGTTTCAAAATACAAC 1365
Query 1399 CTTTAGTCCAAACAATCTCATGGATAGTAGCTGCTCTTGTGATAGCCATTAATGGGTATC 1458
| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1366 CATTAGTCCAGACAATCTCATGGATTGTAGCTGCCCTTGTGATAGCCATTAATGGGTATC 1425
Query 1459 TAATGGTGGATTTCTTCTCAGGAGCTGCAACGAATTTGATTTTGCTTGTGCCAGTGATCA 1518
|||||||||| |||||||||||||| || ||||| || ||||||| |||||||||||||
Sbjct 1426 TAATGGTGGACTTCTTCTCAGGAGCAGCGACGAACGTGGTTTTGCTCGTGCCAGTGATCA 1485
Query 1519 TATTCGCAATTGCTTATGTTGTGTTTGTACTTTACCTTATCTCACGAGG-ACTCACGTAC 1577
||||||||||||| |||||| ||||||| ||||||||||| |||||||| | ||||||||
Sbjct 1486 TATTCGCAATTGCGTATGTTTTGTTTGTGCTTTACCTTATATCACGAGGCA-TCACGTAC 1544
Query 1578 ACTCCTTGGCAACTAGTGGCTTCTTCACATAAAGAACCACAGAGGGATGATGAGTGAGTA 1637
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1545 ACTCCCTGGCAACTAGTGGCTTC---ACATAAAGAACCACAGAGGGATGATGAGTAAGTG 1601
Query 1638 AAGGAAAAGCAAAGAGACCTTTTCATTGAAGAATAAGAATAAGAGAGATTGCTCTTTTTA 1697
||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1602 AAGGAAAAGCAAAGAGACCTTTTCATTGAAGAATAAGAATAAGAGAGAT-G--------A 1652
Query 1698 GTGAAACAAACAATAGAAAGTTGAGTTTCAGTATGGTAACAAAACAATGTCCTGATGTAT 1757
|| ||||||||||||||||| |||||||||||||||||| | | || | ||
Sbjct 1653 ---AA-CAAACAATAGAAAGTTGGGTTTCAGTATGGTAACAA-----T-T--TG-T--AT 1697
Query 1758 TTGTATTATAGTGTTTTATGGTTTTTAGAGTATAGCTTTGGAAGAATCCGAA-T----CG 1812
| |||||||||||||||||| ||| ||||| |||||||||||| ||| | ||
Sbjct 1698 ----A--ATAGTGTTTTATGGTTTT-AGAATATAGTTTTGGAAGAATCTGAACTGTTTCG 1750
Query 1813 TATCGTTTGTGTAAAACTTCCGGCGTTTCTTAGAATTTTGGCA 1855
|||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 1751 TATCATTTGTGTAAGACTTCCGGCGTTTCTTTGAATTTTGGCA 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73323721625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5