BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67340.1
Length=2412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358826 jgi|Araly1|358826|fgenesh1_pg.C_scaffold_8002613 3271 0.0
> Ahg358826 jgi|Araly1|358826|fgenesh1_pg.C_scaffold_8002613
Length=2133
Score = 3271 bits (1771), Expect = 0.0
Identities = 2019/2136 (95%), Gaps = 27/2136 (1%)
Strand=Plus/Plus
Query 149 ATGGAGGTGTCTTGGTTAAGAGTTCTTCTAGATAACATCTCCTCCTATCTAAGTTTATCA 208
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAGGTGTCTTGGTTACGAGTTCTTCTAGATAACATCTCCTCCTATCTAACTTTATCA 60
Query 209 TCTATGGACGATTTATCTTCAAACCCTGCTCATAAGTACTACACCAGAGGAGAAGATATA 268
||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 61 TCTATGGACGACTTATCTTCAAACCCTGCTCTTAAGTACTACACCAGAGGTGAAGAGATA 120
Query 269 GGAAAGCTTATCAAGCCTGTTCTTGAGAACCTCATTGACTCTGACGCGGCTCCTAGCGAG 328
||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TCAAACCTTCTCAAGCCTGTTCTTGAGAACCTCATTGACTCTGACGCTGCTCCTAGCGAA 180
Query 329 TTGCTTAACAATGGTTTTGAAGAATTAGCTCAATACGT-TGATGAACTTAGAGAACAGTT 387
||||| ||||| ||||| |||||||||||||||||| | ||||||||| |||||||||||
Sbjct 181 TTGCTCAACAACGGTTTCGAAGAATTAGCTCAATAC-TGTGATGAACTAAGAGAACAGTT 239
Query 388 TCAGAGTTGGCAACCTCTTTCAACTAGAATCTTTTATGTTCTTCGAATTGAATCATTAGC 447
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TGAGAGTTGGCAACCTCTTTCAACTAGAATCTTTTATGTTCTTCGAATTGAGTCATTAGC 299
Query 448 ATCAAAGTTACGAGAATCCAGTTTGGAAGTCTTTCAGCTCCTCAAACACTGCGAACAACA 507
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCAAAGTTGCGAGAATCCAGTTTGGAAGTCTTTCAGCTCCTCAAACACTGCGAACAACA 359
Query 508 TTTGCCTGCTGAC-TTGATCTCACCTTCTTTTGAGGAGTGCATTGAATTGGTGAAGTTAG 566
||| ||||||||| | || ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 360 TTTACCTGCTGACACT-ATTTCACCATCTTTTGAGGAGTGCATAGAATTGGTGAAGTTAG 418
Query 567 TGGCAAGAGACGAAATATCGTATACTATTGATCAAGCTCTAAAAGATCAAAAGAAAGGTG 626
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TGGCAAGAGACGAAATTTCGTATACTATTGATCAAGCTCTAAAAGATCAAAAGAATGGTG 478
Query 627 TTGGACCTACTTCAGAGGTTCTGGTGAAAATTGCCGAGAGTACTGGTTTAAGATCCAACC 686
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 TTGGTCCTACTTCAGAGGTTCTGGTGAAAATTGCTGAGAGTACTGGTTTAAGATCCAACC 538
Query 687 AGGAGATTCTTGTTGAAGGTGTGGTACTTACAAACATGAAGGAGGATGCTGAGCTTACCG 746
||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 AGGAGATTCTTATTGAGGGTGTGGTACTTACAAATATGAAGGAGGATGCTGAGCTTACCG 598
Query 747 ATAATGACACCGAAGCCGAGTATCTAGACGGATTGATCTCTCTAACAACACAAATGCATG 806
||||||||||||| || |||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 599 ATAATGACACCGAGGCTGAGTATCTAGACGGTTTGATCTCTCTAACAACTCGAATGCATG 658
Query 807 AGTACCTTAGCGACATAAAGCAGGCTCAGTTACGTTGTCCAGTACGCGTACCTTCTGATT 866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 AGTACCTTAGCGACATAAAGCAGGCTCAGTTACGTTGTCCAGTACGCGTACCTTCTGACT 718
Query 867 TCCGCTGCTCTCTATCTCTTGAGCTTATGACTGATCCAGTCATTGTAGCATCTGGTCAAA 926
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 TCCGCTGCTCTCTATCTCTTGAGCTTATGACTGATCCAGTCATTGTGGCATCTGGTCAAA 778
Query 927 CATTCGAACGGGTTTTTATCCAGAAATGGATCGATATGGGACTCATGGTTTGTCCAAAGA 986
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CATACGAACGGGTTTTTATCCAGAAATGGATCGATATGGGACTCATGGTTTGTCCAAAGA 838
Query 987 CAAGGCAGGCTTTATCTCATACCACTTTGACACCTAATTTCATTGTCAGAGCTTTTCTTG 1046
|||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 839 CAAGGCAGTCTTTATCTCATACCACTTTGACTCCTAATTTCATTGTCAGGGCTTTTCTTG 898
Query 1047 CAAGTTGGTGTGAAACTAACAATGTCTATCCTCCTGATCCATTGGAGTTGATTCACTCAA 1106
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCAGTTGGTGTGAAACTAACAATGTCTATCCTCCTGATCCATTGGAGTTGATTCACTCAA 958
Query 1107 GTGAGCCATTCCCTCTTCTTGTTGAATCAGTGAGAGCTTCATCATCAGAG-A---ATGGC 1162
|| ||||||||||||||||| ||||||||||||||||||||||||||||| | || ||
Sbjct 959 GTCAGCCATTCCCTCTTCTTCTTGAATCAGTGAGAGCTTCATCATCAGAGAATTCATCGC 1018
Query 1163 C-ATTCAGAAT---C-TTTAGATGCAGAGGAACTGCGTCAGGTCTTTAGTAGGTCTGCTT 1217
| || ||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 CAATAAAGAATGGCCAGGCAGATGCAGAGGAACTGCCTCAGGTCTTTAGTAGGTCTGCTT 1078
Query 1218 CGGCGCCAGGCATTGTCTCTGAAGTGGTTTGCAAAACCAAAAGAA--AC-AA--C-AATG 1271
| || |||||||||||||||||||||||||||||||||||||||| || || | | ||
Sbjct 1079 CTGCACCAGGCATTGTCTCTGAAGTGGTTTGCAAAACCAAAAGAAGCACTAATGCTACTG 1138
Query 1272 CTGCTGCAGATAGATCACTG----A--CACGGAGTAATACCCCTTGGAAATTTCCAGAAG 1325
||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1139 CTGCTGCAGATAGATCAGTGTCACAGGCACGGAGTAATACCCCTTGGAAATTTCCAGAAG 1198
Query 1326 AGAGGCATTGGCGTCACCCCGGGATCATCCCAGCGACCGTAAGAGAAACAGGAAGCAGTT 1385
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 AGAGGCATTGGCGTCACCCCGGGATCATCCCAGCGACCATAAGAGAAACAGGAAGCAGTT 1258
Query 1386 CAAGTATCGAAACCGAGGTGAAGAAACTCATTGATGATCTCAAGAGTTCTTCATTGGATA 1445
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1259 CAAGTATCGAAACCGAGGTGAAGAAACTCATTGAGGATCTCAAGAGTTCTTCATTGGATA 1318
Query 1446 CACAGAGAGAGGCCACAGCTAGAATCAGGATACTAGCAAGAAACAGTACAGACAATCGCA 1505
|||||||||| || || ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1319 CACAGAGAGATGCTACGGCTCGAATCAGGATACTATCAAGAAACAGTACAGACAATCGCA 1378
Query 1506 TTGTCATTGCGCGGTGCGAAGCAATCCCTTCGTTAGTCAGTCTTCTTTACTCAACGGATG 1565
|||| ||||| |||||| |||||||||||||||||| ||||||||||| || |||||||
Sbjct 1379 TTGTGATTGCAAGGTGCGGAGCAATCCCTTCGTTAGTGAGTCTTCTTTATTCCACGGATG 1438
Query 1566 AGAGAATCCAAGCAGACGCAGTGACTTGCTTACTAAACTTATCCATCAACGACAACAACA 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGAGAATCCAAGCAGACGCAGTGACTTGCTTACTAAACTTATCCATCAACGACAACAACA 1498
Query 1626 AGTCCCTCATCGCGGAAAGTGGAGCCATCGTACCGCTTATTCACGTTCTCAAAACAGGAT 1685
||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1499 AGTCCCTCATCGCGGAAAGTGGAGCTATCGAACCGCTCATTCACGTTCTCAAAACAGGAT 1558
Query 1686 ACTTAGAAGAAGCTAAAGCAAACTCAGCAGCAACTCTATTCAGCTTGTCGGTGATCGAAG 1745
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1559 ACTTAGAAGAAGCTAAAGCAAACTCAGCAGCAACTCTATTCAGCTTATCGGTGATCGAAG 1618
Query 1746 AGTACAAGACAGAGATAGGAGAAGCAGGAGCTATAGAGCCACTTGTTGACCTCTTAGGAA 1805
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1619 AGTACAAGACAGAGATAGGAGAAGCAGGAGCTATAGAGCCACTTGTTGATCTCTTGGGAA 1678
Query 1806 GTGGAAGTCTCAGTGGGAAGAAAGATGCAGCCACGGCTTTATTCAACCTCTCAATACACC 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GTGGAAGTCTCAGTGGGAAGAAAGATGCAGCCACGGCTTTATTCAACCTCTCAATACACC 1738
Query 1866 ATGAGAACAAAACGAAAG-TAATCGAAGCTGGAGCAGTGAGATACTTAGTTGAACTGATG 1924
||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1739 ATGAGAACAAAAC-AAAGGTAATCGAAGCTGGAGCAGTGAGATACTTAGTAGAATTGATG 1797
Query 1925 GATCCTGCTTTTGGGATGGTGGAGAAAGCTGTGGTGGTGCTAGCGAATCTTGCAACGGTT 1984
|||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1798 GATCCTGCTTTTGGAATGGTGGAGAAAGCTGTGGTAGTTCTGGCGAATCTTGCAACGGTT 1857
Query 1985 AGAGAAGGAAAGATTGCGATAGGCGAAGAAGGAGGAATACCGGTATTGGTGGAAGTTGTG 2044
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1858 AGAGAAGGAAAGATTGCGATTGGCGAAGAAGGAGGAATACCGGTATTGGTGGAAGTTGTG 1917
Query 2045 GAGTTAGGTTCAGCAAGAGGCAAAGAGAATGCAACTGCAGCACTATTGCAGCTTTGTACG 2104
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1918 GAGTTAGGATCAGCAAGAGGCAAAGAGAATGCAACTGCAGCACTGTTGCAGCTTTGTACG 1977
Query 2105 CATAGCCCGAAATTCTGCAACAATGTCATAAGAGAAGGAGTGATTCCACCTCTTGTGGCA 2164
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1978 CATAGCCCGAAATTCTGCAACAGTGTCATAAGAGAAGGAGTGATTCCACCTCTAGTGGCA 2037
Query 2165 CTTACTAAATCAGGAACAGCTAGAGGCAAAGAGAAGGCACAGAATCTTCTGAAGTACTTT 2224
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2038 CTTACTAAATCAGGAACAGCTAGAGGCAAAGAGAAGGCACAGAATCTTCTAAAGTACTTT 2097
Query 2225 AAAGCACACAGACAAAGCAATCAGAGGAGAGGCTGA 2260
|||| ||||||||||| |||||||||||||||||||
Sbjct 2098 AAAGTACACAGACAAAACAATCAGAGGAGAGGCTGA 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90883324570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5