BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67350.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951486 jgi|Araly1|951486|scaffold_803373.1 1269 0.0
> Ahg951486 jgi|Araly1|951486|scaffold_803373.1
Length=941
Score = 1269 bits (687), Expect = 0.0
Identities = 871/955 (91%), Gaps = 32/955 (3%)
Strand=Plus/Plus
Query 45 GGAAGCTTCGAAAATGGCGATGACTTGTACGGAAGACGATGACAAA-ACCCTTTTGATCT 103
|||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||
Sbjct 8 GGAAGCTTCGAAAATGGCGAGGACTTGTACGGAAGATGATGA-AAACGCCCTTCTGATCT 66
Query 104 CTCATCGCTATCAAGAAGACGACGATGACGTagaagaagaaga-agaagaagaagCTTTG 162
|||||||| ||||||||||||| | || ||| || | | | ||||||||||||||||
Sbjct 67 CTCATCGCAATCAAGAAGACGA--A-GA---AGACGATG-ACATAGAAGAAGAAGCTTTG 119
Query 163 TCTCTGTGTGATTTGCCGAACGAGAAGGGCGAATTACGATCGATTGTCAAAGAAGAAGAT 222
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 TCTCTGTGTGATTTACCGAACGAGAACGGCGAATTACGATCGATTGTCAAAGAAGAAGAT 179
Query 223 GAAGAATTCGATTCCGGATTTGAATTTGGAATCGGGTCATCGTTTCGAGCCGGGTCGGAT 282
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAAGAATTCGATTCCGGGTTCGAATTTGGAATCGGGTCATCGTTTCGAGCCGGGTCGGAT 239
Query 283 TCATGTGAACCAGCTCCGGAGATGAGTACAGCTGATGAATTATTCTTCAAAGGCCGAATT 342
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 240 TCATGTGAACCAGCTCCGGAGATGAGTACGGCCGACGAATTATTCTTCAAAGGCCGAATT 299
Query 343 CTGCCGTTACGTCACTCCGTCAGTTTAGACGCCGGACTTAACGAGCCGACCCGGTTGATT 402
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 CTGCCGTTACGTCATTCCGTCAGTTTAGACGCCGGACTTAACGAGCCGACCCGGTTAATT 359
Query 403 ACAAGATCCGAGTCGGTTGAATTCAGACGAACCGGAATTATTAGATCGGACCGGAAAATC 462
||||||||||| |||||||||| |||| ||||||| | |||||||||||||||||||||
Sbjct 360 ACAAGATCCGAATCGGTTGAATACAGAAGAACCGG-A--ATTAGATCGGACCGGAAAATC 416
Query 463 AAAAACAATTTCATCGATTATAGTCAACCAAGTCCACAACCACAGATTCGAAGATCATCG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAAAACAATTTCATCGATTATAGTCAACCAAGTCCACAACCACAGATTCGAAGATCATCG 476
Query 523 AGCATGACGGCTCGTGTGAATTCAATCAGAAACCCTAAATCATCCTCGATTTGGGATTTT 582
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 477 AGCATGACGGCTCGTGTTAACTCAATCAGAAACCCTAAATCATCTTCGATTTGGGATTTT 536
Query 583 CTCAGGCTAGGACTCGTCCGTACACCGGAGATAGAACTCCGAACCACCGCCGGAAACGCG 642
|||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 537 CTCAGGTTAGGACTCGTCCGTACGCCGGAGATCGAACTCCGAACCACCGCCGGGAACGCG 596
Query 643 AAATTGTCAGTGAGTCGGAATAGTAGCTGCAGTAGTACAAGCACGAGTTCGAATTCGAAG 702
| ||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct 597 AGATTGTCAGTGAGTCGAAACAGTAGTTGTAGTAGTACAAGCACGAGTTCGAATTCGAAG 656
Query 703 AAAATAGGATCAGGTGAATCGAGATCGAGGAATAGGAGGAGAAGCTTTATGTTCTCGGAT 762
|||| |||||| ||||| |||||||| |||||| |||||||||||||| |||| ||||||
Sbjct 657 AAAACAGGATCTGGTGAGTCGAGATCTAGGAATCGGAGGAGAAGCTTTTTGTTTTCGGAT 716
Query 763 TGTAAATGTTCGGTGTCGACGGAGACGAAGATGGCACCTGTGAAGATTAAAGTGTCCTCC 822
||||| |||||||||||||||||||||| ||||| ||| |||||||| ||||| |
Sbjct 717 TGTAAGTGTTCGGTGTCGACGGAGACGATGATGGTACCAGTGAAGATCAAAGT-T----- 770
Query 823 GGTGAGACGGAGGAGAAACAGAGGATGATGGAGAAGAAGACGGCGAAGAAAGAAGAGAAA 882
| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 771 G---AGACGGAGGAGAAACAGAGGGTGATGGAAAAGAAGACGGCGAAGAAAGAGGAGAAA 827
Query 883 TCGGCGATGGCGAGGAAGAGAACGTTTGAGTGGTTA------T---CACAGGTTGGTTTT 933
||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 828 ACGGCGATGGCGAGGAAGAGAACGTTTGAGTGGTTAAAAGAGTTGTCACAGGTAGGTTTT 887
Query 934 GTCGTCGATCATGGAAGACGAACCTTGGTCTGAtttttattttttctcaagaaat 988
|| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 888 GTTGTCGATCATGGAAGACGAAGCTTGGTCTGATTTTTGTTTTTT-TCAAGAAAT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5