BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67380.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496862 jgi|Araly1|496862|fgenesh2_kg.8__2678__AT5G67380.2 1434 0.0
Ahg923952 jgi|Araly1|923952|scaffold_105233.1 152 7e-36
> Ahg496862 jgi|Araly1|496862|fgenesh2_kg.8__2678__AT5G67380.2
Length=1250
Score = 1434 bits (776), Expect = 0.0
Identities = 892/945 (94%), Gaps = 19/945 (2%)
Strand=Plus/Plus
Query 488 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTATGCGGTGGGCCAAATATTGTCAA 547
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 324 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTTTGCGGTGGGCCAAATATTGTCAA 383
Query 548 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATATTTGAATATGT 607
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 384 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATTTTTGAATATGT 443
Query 608 TAACAGCACAGACTTTAAAGTTTTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 667
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 444 TAACAGCACAGACTTTAAAGTTCTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 503
Query 668 CATCTATGAGCTGTTGAAGGCACTAGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 727
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 504 TATCTATGAGCTTTTGAAGGCACTGGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 563
Query 728 CGTCAAGCCTCATAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 787
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CGTCAAGCCTCACAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 623
Query 788 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCCTCAAGATA 847
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 624 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCTTCTAGATA 683
Query 848 -TTTCAAGGGACCTGAACTTCTTGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 906
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 684 CTTT-AAGGGACCTGAACTTCTCGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 742
Query 907 GGAGTCTTGGCTGTATGTTTGCAGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 966
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 743 GGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 802
Query 967 ATGACAACCAGGATCAGCTAGTGAAAATCGCCAAGGTGCTTGGGACTGACGAATTGAATG 1026
||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 803 ATGACAATCAGGATCAGCTAGTGAAAATTGCCAAGGTGATTGGGACTGACGAATTGAATG 862
Query 1027 CTTATCTGAACAAGTACCAGTTAGAACTTGATCCACAACTGGAAGCACTTGTTGGGCGGC 1086
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 863 CTTATCTGAACAAGTACCAGTTAGAACTTGACCCACAACTCGAAGCACTTGTTGGGCGGC 922
Query 1087 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCACTTAGTTTCACCCG 1146
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
Sbjct 923 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCATTTGGTGTCACCAG 982
Query 1147 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGACAGATTAACTGCAA 1206
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 983 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGATAGATTAACTGCAA 1042
Query 1207 AAGAAGCCATGGCGCACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 AAGAAGCCATGGCACACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1102
Query 1267 GAAGTCAATGAAACACAGAGATCTCTCTGTCTATAAACTTACTGATGATGATGATGGTAA 1326
|||||||||||| ||||||||||| ||| | | || ||| ||| ||||||||||||||
Sbjct 1103 GAAGTCAATGAA-CACAGAGATCTGTCT-T-TG-AA-CTTTCTGGTGATGATGATGGTAT 1157
Query 1327 TGTTCATCTTTTCTTCAAAGTAttttttttAAATCAAGGTGATGTTTCTTCTGTCCAACT 1386
|||||||||||||||||| ||||| || | | ||||| ||||||||||||||||||||
Sbjct 1158 TGTTCATCTTTTCTTCAA-GTATTCTTAT-A--TCAAGATGATGTTTCTTCTGTCCAAC- 1212
Query 1387 TATTAAACAATTTGTCCTGAATTCGAATGTCTGAAACGTCTTATA 1431
| || |||||||||| ||| |||||||||||| |||||||
Sbjct 1213 -A--AA----TTTGTCCTGACTTCAAATGTCTGAAACCTCTTATA 1250
Score = 438 bits (237), Expect = 5e-122
Identities = 291/316 (92%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 78 ctcttcttcgattctcctcttcgacgtctcttGTTACTGTGCGCCGTCTTAGCCTTACGT 137
||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 19 CTCTTCTTCGAATCTCCTCTTCGACGTCTC----T--TGTGCGCCGTCTTAACCTTACGT 72
Query 138 GCGCCAACGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAGAGCT 197
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 73 GCGCCGTTGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAAAGCT 132
Query 198 GTCTCGGAAGTTTCCGGTTGTACTACGATCGATCCAGATT-TTCTCGTAGAGATCTCTGA 256
||||| || ||||||||| |||| |||||||||||||||| || |||| |||||||||||
Sbjct 133 GTCTCCGACGTTTCCGGTAGTACCACGATCGATCCAGATTCTT-TCGTCGAGATCTCTGA 191
Query 257 TTCTAACCAGACGCGGGCGATGTCGAAAGCTCGTGTGTACACCGAAGTCAATGTGATTCG 316
||||||||||||||| |||||||||||||||||||| |||||||| || || ||||||||
Sbjct 192 TTCTAACCAGACGCGAGCGATGTCGAAAGCTCGTGTTTACACCGACGTTAACGTGATTCG 251
Query 317 ACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 376
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ACCTAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 311
Query 377 TGAGGTAGTAAGGAAG 392
||||||||||||||||
Sbjct 312 TGAGGTAGTAAGGAAG 327
> Ahg923952 jgi|Araly1|923952|scaffold_105233.1
Length=328
Score = 152 bits (82), Expect = 7e-36
Identities = 111/123 (90%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 761 GCTGCGTAAGCTTCGTCTTATAGATTGGGGTCTTGCTGAGTTTTACCACCCTGGAAAAGA 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GCTGCGTAAGCTTCGTCTTATAGATTGGGGTCTTGCTGAGTTTTACCACCCTGGAAAAGA 247
Query 821 GTATAATGTCCGTGTTGCCTCAAGATATTTCAAGGGACCTGAACTTCTTGTGGACTTGCA 880
|||||||||||||||||| | | |||||||||||||||||| | |||||||||
Sbjct 248 GTATAATGTCCGTGTTGC-T-----T----CAAGGGACCTGAACTTCTCGCGGACTTGCA 297
Query 881 AGA 883
|||
Sbjct 298 AGA 300
Score = 104 bits (56), Expect = 2e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 303 GTCAATGTGATTCGACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGG 361
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GTCAACGTGATTCGACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGG 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5