BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67385.1
Length=2026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496860 jgi|Araly1|496860|fgenesh2_kg.8__2676__AT5G67385.1 3219 0.0
Ahg897878 jgi|Araly1|897878|Al_scaffold_0005_1844 364 1e-99
> Ahg496860 jgi|Araly1|496860|fgenesh2_kg.8__2676__AT5G67385.1
Length=2022
Score = 3219 bits (1743), Expect = 0.0
Identities = 1932/2025 (95%), Gaps = 6/2025 (0%)
Strand=Plus/Plus
Query 1 CGGCACGTCTTCTTCATGAGAAGGACTTGAAATAGTGTTCCATGGTGAATTTCTTGAGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGCACGTCTTCTTCATGAGAAGGACTTGAAATAGTGTTCCATGGTGAATTTCTTGAGTG 60
Query 61 AAAAGAAACTGCGAGCTAAGTGTTCGTAATATGTCAGCAAAGAAGAAAGATCTTTTGTCC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAGAAACTGCGAGCTAAGTGTTCGTAATATGTCAGCAAAGAAGAAAGATCTTTTGTCT 120
Query 121 TCAGCTATGAAAAGAACCAGTGAATGGATTTCTTCTCAAGAAGTATCTAGTGATGTCACC 180
||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 121 TCAGCCATGAAGAGAACCAGTGAATGGATCTCTTCTCAAGAAGTCTCTAGTGATGTTACC 180
Query 181 GTTCATGTAGGAGAAGCTTCGTTTTCACTGCACAAGTTTCCACTCATGTCAAAATGTGGG 240
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GTTCATGTAGGAGAAGCTTCTTTTTCACTGCACAAGTTTCCACTCTTGTCAAAATGTGGG 240
Query 241 TTTATCAAGAAACTTGTGTCGGAATCAAGCAAAGATTCAGATTCCACTGTTATCAAGATA 300
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct 241 TTTATCAAGAAACTTGTGTCGGAATCAAACAAAGATTCAGATTCCACCGTTATCAATATA 300
Query 301 CCAGATATTCCAGGAGGCTCTGAAGCATTTGAGCTAGCGGCTAAGTTCTGCTACGGCATT 360
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 301 ACAGATATCCCAGGAGGCTCTGAAGCATTCGAGCTAGCTGCTAAGTTCTGCTACGGAATT 360
Query 361 AACTTTGATATGAGCACAGAGAACATTGCCATGTTGCGATGTGCAGCGGAGTATCTAGAG 420
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 361 AACTTTGATATGAGTACAGAGAACATTGCCATGCTGCGATGTGCAGCAGAGTATCTAGAG 420
Query 421 ATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTAAGAGCCGAAGCTTACTTGAATGAA 480
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 421 ATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTAAGAGCCGAATCTTACTTGGATGAA 480
Query 481 GTAGCTCTCAAGAGCTTATCGAGTTCGATCACAGTCTTGCACAAATCAGAG-AAGTTGTT 539
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 481 GTAGCTCTCAAGAGCTTATCGAGTTCGATCACTGTCTTGCACAAATCAGAGGAA-TTGTT 539
Query 540 GCCCATTGCTGAAAGAGTCAAACTTGTAAGCCGTTGCATCGATGCAATTGCTTATATGAC 599
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GCCCATTGCTGAAAGAGTAAAACTTGTGAGCCGTTGCATCGATGCAATTGCTTATATGAC 599
Query 600 TTGTCAAGAGAGCCATTTTTGCAGTCCTTCTTCAAGTAATAGCGGTAACAATGAGGTTGT 659
|||||| |||||||| |||||||||||||| || |||||||| |||||||||||||||||
Sbjct 600 TTGTCAGGAGAGCCAATTTTGCAGTCCTTCCTCTAGTAATAGTGGTAACAATGAGGTTGT 659
Query 660 GGTTCAGCAGCAGAGCAAGCAGCCTGTTGTTGATTGGTGGGCTGAAGACTTAACGGTTCT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 660 GGTTCAGCAGCAGAGCAAGCAGCCTGTGGTTGATTGGTGGGCTGAAGACTTAACGGTCCT 719
Query 720 TAGGATTGATTCGTTTCAACGTGTCCTGATCGCGATGATGGCTAGAGGGTTTAAGCAGTA 779
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TAGGATTGATTTGTTTCAACGTGTCCTGATCGCGATGATGGCTAGGGGGTTTAAGCAGTA 779
Query 780 TGGACTTGGTCCAGTGCTTATGCTCTATGCTCAGAAATCTCTTCGAGGGTTGGAAATTTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGACTTGGTCCAGTGCTTATGCTCTATGCTCAGAAATCTCTTCGAGGGTTGGAAATTTT 839
Query 840 CGGGAAAGGAATGAAGAAGATTGAGCCAAAACAAGAACACGAGAAAAGAGTGATTCTTGA 899
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 CGGGAAAGGTATGAAGAAGATTGAACCAAAACAAGAACACGAGAAAAGAGTGATTCTTGA 899
Query 900 AACAATCGTAAGCCTTCTTCCTCGAGAGAAAAATGCAATGTCGGTTAGCTTTCTCTCTAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AACAATCGTAAGCCTTCTTCCTCGAGAGAAAAATGCAATGTCGGTTAGCTTTCTCTCTAT 959
Query 960 GCTTCTACGCGCAGCAATATTCCTCGAAACAACGGTTGCTTGTAGACTTGACTTGGAAAA 1019
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 960 GCTTCTACGTGCAGCAATATTCCTTGAAACAACGGTTGCTTGTAGACTTGACTTGGAGAA 1019
Query 1020 CAGAATGGGATTACAATTAGGACAAGCCGTGCTCGATGATCTCTTGATTCCTTCTTATTC 1079
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GAGAATGGGATTACAATTAGGACAAGCCGTGCTCGACGATCTCTTGATTCCTTCTTATTC 1079
Query 1080 ATTCACTGGAGATCACTCCATGTTTGATACTGACACTGTTCAACGCATTCTCATGAATTA 1139
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATTCACTGGAGATCACTCTTTGTTTGATACTGACACTGTTCAACGCATTCTCATGAATTA 1139
Query 1140 TCTCGAGTTTGAAGTCGAAGGAGTTCGCTTAAGCAATAATGGTGTTGATCTTGCTGGTGA 1199
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 TCTTGAGTTTGAAGTTGAAGGAGTTCGCTTAAGCAATAACGGTGTTGATCTTGCTGGTGA 1199
Query 1200 TATGGAACGTGTTGGTAAACTTTTGGAGAATTATATGGCTGAAATTGCTTCTGATAGAAA 1259
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TATGGAACGTGTTGGTAAACTGTTGGAGAATTATATGGCTGAAATTGCATCTGATAGAAA 1259
Query 1260 TGTGAGCTTGCAGAAATTCATCGGTTTAGCTGAACTTATCCCCGAACAGTCTAGGGTTAC 1319
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 1260 TGTGAGCTTGCAGAAATTCATCAGTTTAGCTGAACTTATTCCTGAACAGTCTAGGGTTAC 1319
Query 1320 TGAAGATGGTATGTATCGAGCCGTCGACATCTACCTTAAGGCGCATCCCAATATGAGTGA 1379
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1320 TGAAGATGGGATGTATCGAGCCGTCGACATCTACCTTAAGGCGCATCCAAATATGACTGA 1379
Query 1380 TGTAGAGAGGAAGAAAGTGTGCAGCTTAATGGACTGCCAAAAACTATCACGAGAAGCCTG 1439
| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1380 TATTGAGAGGAAGAAAGTATGCAGCTTAATGGATTGCCAAAAACTATCACGAGAAGCTTG 1439
Query 1440 CGCTCATGCAGCTCAGAATGATCGTCTTCCTGTTCAGACCATTGTTCAAGTCCTTTACTA 1499
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CGCTCATGCAGCTCAGAACGATCGTCTTCCTGTTCAGACCATTGTTCAAGTCCTTTACTA 1499
Query 1500 CGAGCAACAACGTCTACGAGGAGAAGTCACTAACGATTCAGATTCTCCAGCCCCACCACC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CGAGCAACAACGTCTACGAGGAGAAGTCACTAACGATTCAGATTCTCCAGCCCCACCACC 1559
Query 1560 ACCACAACCAGCAGCTGTTCTTCCTCCCAAACTTAGCTCCTACACCGACGAACTCTCCAA 1619
||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1560 ACCTCCACCAGCAGCTGTTCTTCCTCCCAAACTCAGCTCCTACACTGACGAACTCTCCAA 1619
Query 1620 GCTTAAACGCGAAAATCAGGACTTGAAGCTCGAACTTCTCAAAATGAAAATGAAGCTAAA 1679
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1620 GCTGAAACGCGAAAACCAGGACTTGAAGCTCGAACTTCTCAAAATGAAAATGAAGCTTAA 1679
Query 1680 AGAGTTTGAGAAAGAGAGTGAGAAGAAAACATCATCATCAACCATCAGCACGAATCCAAG 1739
|||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||
Sbjct 1680 AGAGTTTGAGAAAGAGAGTGAGAAGAAATCGTCATCACCAACCATCAGCACCAATCCAAG 1739
Query 1740 TTCACCAATCTCAACTGCTTCCACGGGTAAGCCTCCATTGCCAAGAAAGTCATTCATAAA 1799
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1740 TTCACCAATCTCAACTGCTTCCATGGGTAAGCCTCCATTGCCAAGAAAGTCATTCATAAA 1799
Query 1800 CTCTGTTTCCAAGAAACTCGGTAAGCTAAACCCTTTTAGCATCACACCATACAACGGTAG 1859
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1800 CTCTGTTTCAAAGAAACTCGGAAAGCTAAACCCTTTTGGCATCACACCATACAACGGTAG 1859
Query 1860 AGGCAGAACCAAACCACCAAAAGATCGGAGACACTCTATTTCTTGAATACCATATCTATA 1919
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1860 AGGCAGAACGAAACCACCAAAAGATCGGAGACACTCTATTTCTTGAAAACCATATTT-TA 1918
Query 1920 TACACATATA--TAAAGTTGAATTTTTGTTGGAACTTTTAAGTTCTGATTCAAGGGGTTT 1977
||||||||| || ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1919 CACACATATAAGTAT-GTTTAATTTTTGCTGGAACTTTTAAGTTCTGATTCAAGGATTTT 1977
Query 1978 TCTTCCTGCTTATCAACATTTGATATTTTGGTGTGTTTATGATGT 2022
| || || ||||||||||||||||||||| |||||||||||||||
Sbjct 1978 TTTTTCTACTTATCAACATTTGATATTTTTGTGTGTTTATGATGT 2022
> Ahg897878 jgi|Araly1|897878|Al_scaffold_0005_1844
Length=1656
Score = 364 bits (197), Expect = 1e-99
Identities = 422/527 (80%), Gaps = 30/527 (6%)
Strand=Plus/Plus
Query 103 AAGAAAGATCTTTTGTCCTCAGCTATGAAAAGAACCAGTGAATGGATTTCTTCTCAAGAA 162
||||| || ||| |||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 10 AAGAAGGAGCTTCTGTCCTCAGCTATGGAGAGAACTAGTGAATGGATTTCTTCTCAAGAA 69
Query 163 GTAT-CTAGTGATGTCACCGTTCATGTAGGAGAAGCTTCGTTTTCACTGCACAAGTTTCC 221
| | ||||||| ||||| |||||||| |||||| ||||||||||||| |||||||||||
Sbjct 70 AT-TCCTAGTGACGTCACTGTTCATGTTGGAGAAACTTCGTTTTCACTCCACAAGTTTCC 128
Query 222 ACTCATGTCAAAATGTGGGTTTATCAAGAAACTTG-TGTCGGAATCAAGCAAAGATTC-- 278
||| | ||||||||||||||||| |||||||||| | || |||||||||| |||||
Sbjct 129 ACTTGTTTCAAAATGTGGGTTTATAAAGAAACTTGCT-TCCAAATCAAGCAACGATTCGA 187
Query 279 AGATTCCACTGTTATCAAGATACC-AGATATTCCAGGAGGCT-CTGAAGCATTTGAGCTA 336
| ||| || |||||||| || || |||| |||| ||||| | | || ||||||||||||
Sbjct 188 ACATT--ACCGTTATCAAAAT-CCAAGATTTTCCCGGAGG-TGCAGAGGCATTTGAGCTA 243
Query 337 GCGGCT-AAGTTCTGCTACGGCATTAA-CTTTGATATGAGCACAGAGAACATTGCCATGT 394
|| | ||||||||||||| || ||| ||| || || | ||||||||||||||| |||
Sbjct 244 GC-AATCAAGTTCTGCTACGACA-TAAGCTTCGAGATAAACACAGAGAACATTGCGATGC 301
Query 395 TGCGATGTGCAGCGGAGTATCTAGAGATGACAGAGGAACACTCTGTGGAAAATCTCGTTG 454
| || |||||||| |||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 302 TACGTTGTGCAGCAGAGTATCTAGAGATGACAGAGGAACACTCTGTTGAAAACCTAGTGG 361
Query 455 TA-AGAGCCGAAGCTTACTTGAATGAAGTAGCTC-TCAAGAGCTTATCGAGTTCGATCAC 512
| | | || | |||| | || ||||| | || ||||||| ||||||| ||| | |
Sbjct 362 -AGACAATAGAGGTTTACCTAAACGAAGTGG-TCCTCAAGAGTTTATCGAAATCGGTTAA 419
Query 513 AGT-CTTGC-ACAAATCAGA-GAAGTTGTTGCCCATTGCTGAAAGAGTCAAACTTGTA-A 568
||| || || | ||||| | || |||||||| || || || ||||| | ||| || |
Sbjct 420 AGTTCT-GCGA-AAATCTCAAGAT-TTGTTGCCTATAGCCGAGAGAGTGAGACTCGTGGA 476
Query 569 GCCGTTGCATCGATGCAATTGCTTATATGACTT-GTCAAGAGAGCCA 614
||| || |||||| ||||||||||| || || |||| ||||||||
Sbjct 477 -CCGGTGTATCGATTCAATTGCTTATG-GAGTTTGTCAGGAGAGCCA 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76180490000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5