BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67400.1 Length=1218 Score E Sequences producing significant alignments: (Bits) Value Ahg951478 jgi|Araly1|951478|scaffold_803365.1 1526 0.0 Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091 82.4 7e-15 > Ahg951478 jgi|Araly1|951478|scaffold_803365.1 Length=1030 Score = 1526 bits (826), Expect = 0.0 Identities = 954/1016 (94%), Gaps = 8/1016 (1%) Strand=Plus/Plus Query 39 AAATGGCGCGGTTCAGTCTGGTTGTAGTCGTGACTCTTAGTC-TTGCCATCTCTATGTTC 97 ||||||||||||| |||||||| |||||||| ||||||| | | ||||||||||| || Sbjct 19 AAATGGCGCGGTTTGGTCTGGTTCTAGTCGTGGCTCTTAG-CATCACCATCTCTATGCTC 77 Query 98 CCTGACACAACCACTGCTCAACTCAAAACCAATTTCTAC-GGAAACTCATGTCCGAATGT 156 || ||||||||||||||||| |||||||| ||||||||| ||||| |||||||| ||||| Sbjct 78 CCGGACACAACCACTGCTCAGCTCAAAACAAATTTCTACGGGAAA-TCATGTCCAAATGT 136 Query 157 TGAACAAATCGTGAAAAAAGTCGTCCAA-GAAAAAATCAAACAGACCTTCGTCACCATCC 215 |||| ||||||||||| ||||||| || | |||||||||||||||||||||||||||| Sbjct 137 TGAAAAAATCGTGAAACAAGTCGT-TAACCAGAAAATCAAACAGACCTTCGTCACCATCC 195 Query 216 CAGCTACTCTCCGCCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCGTCGGTCA 275 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 196 CAGCTACTCTCCGTCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCATCGGTCA 255 Query 276 TGATTCAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGG 335 ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 256 TGATTCAGTCAACGCCTAACAACAAAGCCGAGAAGGATCATCCAGACAATCTTTCTTTGG 315 Query 336 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTCTTGACGCTATCCCAAGTT 395 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 316 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTATTGACGCTATCCCAAGTT 375 Query 396 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTGCTTTAGCCACCCGTGATGTTGTTGTCG 455 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 376 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTACTTTAGCCACCCGAGATGTTGTTGTCG 435 Query 456 CCGCCAAAGGTCCGTCGTACGCAGTGGAACTCGGAAGGTTTGATGGTTTGGTGTCGACTG 515 ||||| ||| ||||| ||| | ||||| ||||||||||||||||||||||||||||||| Sbjct 436 CCGCCGGAGGACCGTCTTACACGGTGGAGCTCGGAAGGTTTGATGGTTTGGTGTCGACTG 495 Query 516 CGGCTAGCGTTAACGGAAACTTGCCCGGACCAAATAACAAAGTTACAGAACTTAACAAGC 575 ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || Sbjct 496 CGGCTAGCGTTAACGGAAACTTGCCAGGACCAAATTTCAAAGTTACAGAACTTAACGCGC 555 Query 576 TTTTTGCCAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 635 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 TTTTTGCGAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 615 Query 636 TTGGATTCGCCCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCTCACACACG 695 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 616 TTGGATTCGCTCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCGCACACACT 675 Query 696 CCGTTGACCCAACTCTAAACAAAGCCTACGCTAAAGAACTTCAGTTGGCTTGTCCCAAGA 755 |||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 676 CCGTTGACCCAACTATAAACAAAGCCTACGCTAAAGAACTACAGTTGGCTTGCCCCAAGA 735 Query 756 CAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGACAA-TTCGACAAC 814 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 736 AAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGA-AAGTTCGACAAC 794 Query 815 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 854 Query 875 ACCGATGGTCGCTCAAAGCCCACCGTTAACGATTGGGCCAAGAATTCTGTTGCTTTCAAC 934 |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| Sbjct 855 ACCGATGGTCGCTCAAGGCCCACCGTTAACGATTGGGCCAAGGACCCTGTTGCTTTCAAC 914 Query 935 AAGGCTTTCGTAACCGCTATGACCAAACTCGGCCGCGTTGGCGTTAAGACTAGACGCAAC 994 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 915 AAGGCTTTTGTAACCGCTATGACCAAACTCGGCCGCGTTGGTGTTAAGACTAGACGCAAC 974 Query 995 GGTAACATTCGTCGTGACTGTGGTGCCTTTAACTGATCATCCtttttgggttttgt 1050 |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 975 GGTAACATCCGTCGTGACTGTGGCGCCTTTAACTGATTTTCCTTTTTGGGTTTTGT 1030 > Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091 Length=978 Score = 82.4 bits (44), Expect = 7e-15 Identities = 171/229 (75%), Gaps = 22/229 (10%) Strand=Plus/Plus Query 221 ACTCTCCGCCTCTTCTTCCACGATTGCTTCGT-CAATGGATGTGATGCGTCGGTCATGAT 279 |||||||||||||||||||||||||||||||| | || ||||||||||| | ||||| Sbjct 181 ACTCTCCGCCTCTTCTTCCACGATTGCTTCGTTCGGGGG-TGTGATGCGTCAATAATGAT 239 Query 280 T-CAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGGCCG 338 || ||| || | | | | ||| | | |||||||| | || || ||||||| Sbjct 240 AGCA-TCACCG--T-CGGA----G---AGA-G-ACCATCCAGATGACATGTCATTGGCCG 286 Query 339 GAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTC-TTGAC-GCTATCCCAAGTTG 396 |||||||||| ||| ||| | || || ||| |||| | |||| || ||||||| | | Sbjct 287 GAGATGGATTCGACACGGTGGTGAAGGCGAAGCAAGC-CGTTGATAGCAATCCCAACT-G 344 Query 397 CAAAAACAAAGTCTCTTGTGCTGATATTCTTG-CTTTAGCCACCCGTGA 444 | ||||||||||| |||||||| ||| ||| || | ||||| ||||| Sbjct 345 CCGCAACAAAGTCTCATGTGCTGACATT-TTGGCTCTCGCCACTCGTGA 392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45480639981 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5