BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67400.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951478 jgi|Araly1|951478|scaffold_803365.1 1526 0.0
Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091 82.4 7e-15
> Ahg951478 jgi|Araly1|951478|scaffold_803365.1
Length=1030
Score = 1526 bits (826), Expect = 0.0
Identities = 954/1016 (94%), Gaps = 8/1016 (1%)
Strand=Plus/Plus
Query 39 AAATGGCGCGGTTCAGTCTGGTTGTAGTCGTGACTCTTAGTC-TTGCCATCTCTATGTTC 97
||||||||||||| |||||||| |||||||| ||||||| | | ||||||||||| ||
Sbjct 19 AAATGGCGCGGTTTGGTCTGGTTCTAGTCGTGGCTCTTAG-CATCACCATCTCTATGCTC 77
Query 98 CCTGACACAACCACTGCTCAACTCAAAACCAATTTCTAC-GGAAACTCATGTCCGAATGT 156
|| ||||||||||||||||| |||||||| ||||||||| ||||| |||||||| |||||
Sbjct 78 CCGGACACAACCACTGCTCAGCTCAAAACAAATTTCTACGGGAAA-TCATGTCCAAATGT 136
Query 157 TGAACAAATCGTGAAAAAAGTCGTCCAA-GAAAAAATCAAACAGACCTTCGTCACCATCC 215
|||| ||||||||||| ||||||| || | ||||||||||||||||||||||||||||
Sbjct 137 TGAAAAAATCGTGAAACAAGTCGT-TAACCAGAAAATCAAACAGACCTTCGTCACCATCC 195
Query 216 CAGCTACTCTCCGCCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCGTCGGTCA 275
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 196 CAGCTACTCTCCGTCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCATCGGTCA 255
Query 276 TGATTCAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGG 335
||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 256 TGATTCAGTCAACGCCTAACAACAAAGCCGAGAAGGATCATCCAGACAATCTTTCTTTGG 315
Query 336 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTCTTGACGCTATCCCAAGTT 395
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 316 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTATTGACGCTATCCCAAGTT 375
Query 396 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTGCTTTAGCCACCCGTGATGTTGTTGTCG 455
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 376 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTACTTTAGCCACCCGAGATGTTGTTGTCG 435
Query 456 CCGCCAAAGGTCCGTCGTACGCAGTGGAACTCGGAAGGTTTGATGGTTTGGTGTCGACTG 515
||||| ||| ||||| ||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 436 CCGCCGGAGGACCGTCTTACACGGTGGAGCTCGGAAGGTTTGATGGTTTGGTGTCGACTG 495
Query 516 CGGCTAGCGTTAACGGAAACTTGCCCGGACCAAATAACAAAGTTACAGAACTTAACAAGC 575
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 496 CGGCTAGCGTTAACGGAAACTTGCCAGGACCAAATTTCAAAGTTACAGAACTTAACGCGC 555
Query 576 TTTTTGCCAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 635
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTTTTGCGAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 615
Query 636 TTGGATTCGCCCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCTCACACACG 695
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 616 TTGGATTCGCTCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCGCACACACT 675
Query 696 CCGTTGACCCAACTCTAAACAAAGCCTACGCTAAAGAACTTCAGTTGGCTTGTCCCAAGA 755
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 676 CCGTTGACCCAACTATAAACAAAGCCTACGCTAAAGAACTACAGTTGGCTTGCCCCAAGA 735
Query 756 CAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGACAA-TTCGACAAC 814
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 736 AAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGA-AAGTTCGACAAC 794
Query 815 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 854
Query 875 ACCGATGGTCGCTCAAAGCCCACCGTTAACGATTGGGCCAAGAATTCTGTTGCTTTCAAC 934
|||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 855 ACCGATGGTCGCTCAAGGCCCACCGTTAACGATTGGGCCAAGGACCCTGTTGCTTTCAAC 914
Query 935 AAGGCTTTCGTAACCGCTATGACCAAACTCGGCCGCGTTGGCGTTAAGACTAGACGCAAC 994
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 915 AAGGCTTTTGTAACCGCTATGACCAAACTCGGCCGCGTTGGTGTTAAGACTAGACGCAAC 974
Query 995 GGTAACATTCGTCGTGACTGTGGTGCCTTTAACTGATCATCCtttttgggttttgt 1050
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 975 GGTAACATCCGTCGTGACTGTGGCGCCTTTAACTGATTTTCCTTTTTGGGTTTTGT 1030
> Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091
Length=978
Score = 82.4 bits (44), Expect = 7e-15
Identities = 171/229 (75%), Gaps = 22/229 (10%)
Strand=Plus/Plus
Query 221 ACTCTCCGCCTCTTCTTCCACGATTGCTTCGT-CAATGGATGTGATGCGTCGGTCATGAT 279
|||||||||||||||||||||||||||||||| | || ||||||||||| | |||||
Sbjct 181 ACTCTCCGCCTCTTCTTCCACGATTGCTTCGTTCGGGGG-TGTGATGCGTCAATAATGAT 239
Query 280 T-CAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGGCCG 338
|| ||| || | | | | ||| | | |||||||| | || || |||||||
Sbjct 240 AGCA-TCACCG--T-CGGA----G---AGA-G-ACCATCCAGATGACATGTCATTGGCCG 286
Query 339 GAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTC-TTGAC-GCTATCCCAAGTTG 396
|||||||||| ||| ||| | || || ||| |||| | |||| || ||||||| | |
Sbjct 287 GAGATGGATTCGACACGGTGGTGAAGGCGAAGCAAGC-CGTTGATAGCAATCCCAACT-G 344
Query 397 CAAAAACAAAGTCTCTTGTGCTGATATTCTTG-CTTTAGCCACCCGTGA 444
| ||||||||||| |||||||| ||| ||| || | ||||| |||||
Sbjct 345 CCGCAACAAAGTCTCATGTGCTGACATT-TTGGCTCTCGCCACTCGTGA 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5