BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67410.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496856 jgi|Araly1|496856|fgenesh2_kg.8__2672__AT5G67410.1 1208 0.0
> Ahg496856 jgi|Araly1|496856|fgenesh2_kg.8__2672__AT5G67410.1
Length=867
Score = 1208 bits (654), Expect = 0.0
Identities = 807/877 (92%), Gaps = 26/877 (3%)
Strand=Plus/Plus
Query 1 ATGCCAACGAGTCAGCATCATGTCGTTAGAACAGACATTTCAGAGTTAAAATCTCAGATT 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATGCCAACGAGTCAGCATCATGTCGTTAGAACAGACATTGCAGTGTTAAAATCTCAGATT 60
Query 61 GAGAAGAGGATTGGTCGGGCCAAAACAGAGAGTTACCTTAATCTCTTATCAAAATTCTTG 120
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 61 GAGAAGAGGATTGGTCGGGCCAAAACTGAGAGCTACCTTAATCTCTTATCGAAATTCTTG 120
Query 121 AGCTTGAAAATCAGCAAATCTGATTTCGATAAGCTAATCATTGTGACGGTGAAGAGGGAG 180
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AGTTTGAAAATCAGCAAATCTGATTTCGATAAGCTAATCATTGCGACGGTGAAGAGGGAG 180
Query 181 AATATAAGTCTACACAACGCTTTGCTTAGAGGGATTCTTAAGAA--TATATGTCTC-TCA 237
|||||||||||||||||||||||||| ||||||||||||||||| ||| | |||| |||
Sbjct 181 AATATAAGTCTACACAACGCTTTGCTAAGAGGGATTCTTAAGAACGTATGTCTCTCTTCA 240
Query 238 AAGACACTACCTCCATTCG-TAAAGAATGGTGTAGAGTCAGA-T-A-ACAAGAAGAAGAA 293
||| || |||||| || | ||||||||||||| ||| ||| | | | |||||||||||
Sbjct 241 AAG--AC-ACCTCCGTT-GATAAAGAATGGTGT--AGT-AGATTCAGAGAAGAAGAAGAA 293
Query 294 GCAACTAAATGGAGCTTTTCAATCTTTGTGCAAAGAACTTCCTAGATCACCTCGTAAAGG 353
|||| || |||||| ||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 294 GCAATTATATGGAGTTTTTCAATCTTTGTGCAAAGACCTTCCTAAATCGCCTCGTAAAGG 353
Query 354 AAGGACTCAACGGAGGCTTAATAAAGATGGTAATATTAGCAAAGGGAAGAGTCTAGTCAC 413
|||||||||||||||| || ||||||| ||||| |||||||||| || |||||| ||||
Sbjct 354 AAGGACTCAACGGAGG-TT--TAAAGATAGTAATGTTAGCAAAGGTAAAAGTCTAATCAC 410
Query 414 TGAGGTTGTTTCTTCTAGTGGTAGGCAACAATGGTCAATGGAAAATGTTGAAGAAGTTGA 473
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 411 TGAGGTTGTTTCTTCTAGTGGTAGACAACAATGGTTAATGGAAAATGGTGAAGAAGTTGA 470
Query 474 CCAATTGATTCCATGTTGGAGAAGTCAACCTATTGAAGCTCCTTTTGGTGTTAATCTTAG 533
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CCAATTGATTCGATGTTGGAGAAGTCAACCTATTGAAGCTCCTTTTGGTGTTAATCTTAG 530
Query 534 AGATGTTATAAAGAAACAACATCGTATAGACACGTGTTGTTACTCCTCTGGTGAGCTTCC 593
|||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 531 AGATGTTATAGAGAAACAACATCGTATAGGCACATGTTGTTGCTCCTCTGGTGAGCTTCC 590
Query 594 TGATTCGGTTTCTTTAAAGAAGAAACTCGAAGATGACTTGG-----A--G-G-AAGGATT 644
|||||||||||||||||||||||||||||||||||||| || | | | |||||||
Sbjct 591 TGATTCGGTTTCTTTAAAGAAGAAACTCGAAGATGACTCGGGGTTTATAGAGCAAGGATT 650
Query 645 AGAGGTTTCGGTTGGGTTTGCTAACTCGTTAAACGCAGGGCTAGATGTTTTCTTGAAGAG 704
||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||
Sbjct 651 AGAGGTTTCGGTTGGGTTTGCCAACACGTTAAACGCAGGGTTGGATGTTTTCTTGAAGAG 710
Query 705 ATTGATCAAACCGTGTCTTGAACTAGCAGCTTCAAGGTCTAGTAACGCTTCATCAGCATC 764
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 711 ATTGATCAAACCATGTCTTGAATTAGCAGCTTCAAGGTCTAGTAACGCTTCACCAGCATC 770
Query 765 TTCTCTGGTAGATTTTCAAGTAGCTATGGCGTTAAACCCATCGATACTAGGGGAAGATTG 824
||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||
Sbjct 771 TTCTCTGGTAGATTTTCAAGTAGCTATGGAGTTAAATCCGTCGATACTCGGGGAAGATTG 830
Query 825 GCCTACAAAGCTTGAGAAGATCGCCTGCAGATTCAGA 861
|||| ||||||||||||||||||||||||||||||||
Sbjct 831 GCCTGCAAAGCTTGAGAAGATCGCCTGCAGATTCAGA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5