BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67411.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332832 jgi|Araly1|332832|fgenesh1_pm.C_scaffold_8002175 904 0.0
> Ahg332832 jgi|Araly1|332832|fgenesh1_pm.C_scaffold_8002175
Length=1299
Score = 904 bits (489), Expect = 0.0
Identities = 571/611 (93%), Gaps = 3/611 (0%)
Strand=Plus/Plus
Query 1 ATGCAAATCCCTACTCTTATAGACTCCATGGCAAACAAACTCCACAAAAAACCGCCTCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 463 ATGCAAATCCCTACTCTTATAGACTCCATGGCAAACAAACTCCACAAACAACCCCCTCCG 522
Query 61 CTTCTCAAACTCACCGTCATTGCTTCCGACGCTGAATTTCATCCGCCGCCGTTGCTCGGA 120
|||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 523 CTTCTCAAACTCACTGTCATTGCTTCCGACACTGAATCTCATCCGCCACCGTTGCTCGGA 582
Query 121 ATCTCCTACGAAGAGCTAGGTTCAAAGCTAGTAAACTTCGCAACCACACGTAACGTTGCA 180
||||||||||||||||| ||||||||||||||||||||||| || ||||||||| | |||
Sbjct 583 ATCTCCTACGAAGAGCTGGGTTCAAAGCTAGTAAACTTCGCGACAACACGTAACATAGCA 642
Query 181 ATGGAGTTTAGAATCATATCTTCTTCTTACTCCGACGGCCTCTCCTCCCTTATCGAACAA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATGGAGTTTAGAATCATCTCTTCTTCTTACTCCGACGGCCTCTCCTCCCTTATCGAACAA 702
Query 241 CTAAGAATCGACCCATTCGTCTTCAACGAAGCTCTCGTCGTTAACTGCCACATGATGCTT 300
||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 703 CTACGAATCGACCCATTCGTCTTCAATGAAGCTCTCGTTGTTAACTGCCACATGATGCTT 762
Query 301 CACTATATCCCCGACGAAATATTAACTTCGAATC-TC-C-GATCAGTTTTCTTGAAAGAA 357
|| || ||||||||||||| ||||||||||||| || | |||||||||| |||||||||
Sbjct 763 CATTACATCCCCGACGAAACCTTAACTTCGAATCCTCTCCGATCAGTTTTATTGAAAGAA 822
Query 358 CTTCGAGATCTAAACCCAACGATCGTAACCCTTATCGACGAAGACTCGGATTTCACGTCG 417
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 823 CTTCGAGATCTAAACCCAACGATCGTAACCCTAATTGACGAAGACTCGGATTTCACCTCG 882
Query 418 ACTAACTTTATCTCCAGGTTACGGTCTCTTTATAACTACATGTGGATTCCTTACGATACC 477
||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||
Sbjct 883 ACTAACTTTATCTCCAGGTTACGGTCTCTCTACAATTATATGTGGATTCCTTACGAAACC 942
Query 478 GCCGAGATGTTTTTGACACGTGGTAGCGAGCAAAGACAGTGGTATGAGGCAGATATAAGT 537
||||| |||||||||||||| || |||||||| || |||||||| |||||||||||||||
Sbjct 943 GCCGACATGTTTTTGACACGCGGCAGCGAGCATAGGCAGTGGTACGAGGCAGATATAAGT 1002
Query 538 TGGAAGATAGATAACGTAGTAGCCAAGGAAGGTGCGGAGAGAGTGGAGAGATTAGAGCCG 597
||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1003 TGGAAGATAGATAACATAGTAGCCAAGGAAGGTGCGGAGAGGGTGGAGAGATTGGAGCCG 1062
Query 598 AAGAGCCGGTG 608
|||||||||||
Sbjct 1063 AAGAGCCGGTG 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5