BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67420.1
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496854 jgi|Araly1|496854|fgenesh2_kg.8__2670__AT5G67420.1 1275 0.0
Ahg937824 jgi|Araly1|937824|scaffold_502015.1 475 4e-133
> Ahg496854 jgi|Araly1|496854|fgenesh2_kg.8__2670__AT5G67420.1
Length=1314
Score = 1275 bits (690), Expect = 0.0
Identities = 1126/1314 (86%), Gaps = 120/1314 (9%)
Strand=Plus/Plus
Query 248 AATTGGTGTATGATTCTTCTACGGCGGCGAGCCTCACGCACCAATACGCTTCCTTTTTCT 307
|||| ||| | ||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 108 AATTTGTGCAAGATTCTTCTACGGCGTCGAGCGTCACGCACCAATACGCTTCC-TTTTCG 166
Query 308 CTATGTCTCTTCATTATTTTATTATTCCTATAtttttttaaaaaaaaCTCAAAAATATTC 367
|||||||||| | | ||||| || ||| | || | | | ||||||||||
Sbjct 167 ATATGTCTCTT-A--A--TTATT-TT--TAT-TATTCCT-------A-T-AAAAATATTC 208
Query 368 CAATTTGGATTTTAATATATACTAATAATGTGTGTGtatatatatatatatatatatGTG 427
||||||||| ||| || |||| | || ||| ||| || | ||||||||||||||
Sbjct 209 CAATTTGGA-TTT--TA-ATAC--A-AA----TGT-AATA-ATGTGTATATATATATGTG 255
Query 428 GTCTTGTCTA---TCTTCATAAAACATTTTAA--TCTCTCT-TCTCttttttttGTCTGT 481
||||| |||| ||||||||||||| ||||| ||||||| ||||| |||||| |||||
Sbjct 256 GTCTTCTCTATCTTCTTCATAAAACA-TTTAATCTCTCTCTATCTCTCTTTTTT-TCTGT 313
Query 482 GCAAAGATATCACTTTCTTCTTC-TTCTTCTCCCAGACATCAGCAAGATTCAGGAGATTA 540
|||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 314 GCAAAGATATCA-AATCTTCTTCTTTCTTCTCCCAGACATCAGCAACATTCAGGAG---- 368
Query 541 AAACCTTAAATTAAAACAATACAAACTCCAAATTCACCGGAGGAAATAACTTAAAACTTG 600
| || ||||| | | ||| |||| ||||| ||||||| ||| |||
Sbjct 369 --A----GAA--AAAAC--T------T--AAA--CACCAGAGGACATAACTT-AAATTTG 407
Query 601 AATCTG----AAAAGATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAG 656
| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATTCTGAAATAAAAAATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAG 467
Query 657 AATTGTATCCTCCGGCCATGTATTCAATGGATTGAAACCGCCGATGCTCAAGGCCACGCC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 468 AATTGTATCCTCCGGCCATGTATTCAATGGATTGAAACCGCCGATGCTCAAGGTCACGCC 527
Query 717 ACCGTCTTCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTTATCTCCGCTGTT 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 528 ACCGTCTTCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTTATCTCCGCCGTA 587
Query 777 CCGGATTCTCAACGTCCTGCTTTGTTTCAGTCGTTGCTCTACGAAGCTTGTGGAAGAACT 836
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 588 CCGGAATCTCAACGTCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAAGAACT 647
Query 837 GTCAATCCAGTTAACGGAGCAATCGGAATGTTATGGACTGGAAACTGGAATATCTGTCAA 896
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 648 GTGAATCCAGTAAACGGAGCAATCGGAATGTTATGGACTGGAAATTGGAATATCTGTCAA 707
Query 897 GCGGCTGTTGAAACAGTGCTTCGCGGCGGTTCTTTAAGACCGATCCCGGAGCTTCTCACT 956
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 708 GCGGCTGTTGAAACCGTGCTTCGCGGCGGTTCTTTAAGACCGATCCCTGAGCTT------ 761
Query 957 CACGGCGGCGGTTTCGCTGGCTTTCCTTCGCCTACATCTGAAGAAGCATCTGAGATCTGC 1016
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 762 ---GGCGGCGGATTCGCTGGTTTTCCTTCGCCTACATCTGAAGAAGCATCTGAGATCTGT 818
Query 1017 ACCGAAATGTTGAATCTCCAGCAAAATGATTCCACCGATCGTAACATCTATCATCATTCA 1076
|| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 819 ACTGAAATGTTGAATCTTCAGCAAAATGATTCTACCGATCGTAACATCTACCATCATTCT 878
Query 1077 CGATTCTCAAGCTCTAGATCTAGATCTACTATGGATTCTTCTTCTCCGACGAAACGTAAG 1136
||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 879 CGATTTTCAAGCTCTAGATCTAGATCTACGATGGACTCTTCTTCTCCTACGAAACGTAAG 938
Query 1137 AGATTATCATCGGAAGACCAACCATCTTCGGAGCTTGATCTATCTCTCATCCCTAATTTT 1196
||||| ||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 939 CGATTAGCATTAGAACAACAACCATCTTCCGAGCTTGATCTATCTCTGATCCCTAATTTT 998
Query 1197 CCCATTAAG-CAAGCAACACCTTCTTCTACACGGCGGCGATCAGTAACACCGTCGATGAA 1255
|||||||| ||| |||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 999 CCCATTAAAACAA-CAACGCCTTCTTCTACACGGCGGCGATCATTAACTCCGTCGATGAA 1057
Query 1256 CTCAGAGGACTCCGGGACGACGACGACTACGACGGCGTTTTGTGACAAGGGTGATGTGTA 1315
|||||||||||||| |||||||||| | || ||||| ||||| |||||||||||
Sbjct 1058 CTCAGAGGACTCCGTGACGACGACG-----G-CG---TTTTGCGACAAAGGTGATGTGTA 1108
Query 1316 CGGTAACGGAGGAGGAGAAACGACCAAGTTGCTTAACCTTTTTGTTTAATGCAAAACGGC 1375
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1109 CGGGAACGGAGGAGGAGAAACGAGCAAGTTGCTTAACCTTTTTGTTTAATGCAAAACGGC 1168
Query 1376 GGCGGTTTT-CTCAGAGTTAGTCTAGGGTTTTAAATGTAATTTTACACATTTTCTTCCTT 1434
| ||||||| | |||| |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1169 GTCGGTTTTTCGCAGACTTAGTCTAGGGTTTAAAATGTAATTTTACACATTTTCTTC-T- 1226
Query 1435 TTTCCTGGATAAATATTGGACCGGCGAATTAACAACTACGTCGTTTTGTTCTCTCGGTTT 1494
|| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 --------AT---T---GGACCGGCGAATTAACAACTACGTCGTTTTGTTCTCTCGGTTT 1272
Query 1495 TGAGTcccccccccccccACCATTAACCAATTGTAAAACTTTATTGAGTGAAAA 1548
||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 1273 AGAGTCCCCC--------A---TTAACCAAT-GTAAAACTTTATTGAGTGAAAA 1314
Score = 121 bits (65), Expect = 2e-26
Identities = 86/95 (91%), Gaps = 6/95 (6%)
Strand=Plus/Plus
Query 48 ACACAACTTTTCGCGGAAACACGGAGCCGCTCGCACCCATCATCTTGGAATATTTTACCA 107
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ACACAACTTTTCGCGGAAACACGGAGCCGCTCGCACCCATCATCTTGGAATCTTTTACCA 60
Query 108 CACACACActctctctctctAAGGTCACTTCACAA 142
| | ||| ||||||||||||||||||||||
Sbjct 61 CTC------TCTGTCTCTCTAAGGTCACTTCACAA 89
> Ahg937824 jgi|Araly1|937824|scaffold_502015.1
Length=752
Score = 475 bits (257), Expect = 4e-133
Identities = 428/509 (84%), Gaps = 17/509 (3%)
Strand=Plus/Plus
Query 603 TCTGA-AAAGATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAGAATTG 661
||||| || ||||| ||||||||||| || ||||| || ||||||||||| ||||||||
Sbjct 11 TCTGATAATTATGAGTTGCAATGGTTGTCGAGTTCTTCGAAAAGGTTGCAGTGAGAATTG 70
Query 662 TATCCTCCGGCCATGTATTCAATGGATTGAAACCGCC-GATGCTCAAGGCCACGCCACCG 720
|||||||| ||||||||||||||||| | || | || || |||||||||||||||||||
Sbjct 71 CATCCTCCGTCCATGTATTCAATGGATCG-AATCACCTGAAGCTCAAGGCCACGCCACCG 129
Query 721 TCTTCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTT-ATCTCCGCTGTTCCG 779
||||||| ||||| ||||| |||||||| |||||||||| |||| |||||||| || |||
Sbjct 130 TCTTCGTTGCTAAGTTCTTTGGCCGTGCCGGTCTCATGT-CTTTCATCTCCGCCGTACCG 188
Query 780 GATTCTCAACGTCCTGCTTTGTTTCAGTCGTTGCTCTACGAAGCTTGTGGAAGAACTGTC 839
|| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 189 GAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAAGAACTGTG 248
Query 840 AATCCAGTTAACGGAGCAATCGGAATGTTATGGACTGGAAACTGGAATATCTGTCAAGCG 899
||||| || |||||||| ||||| |||| |||||||| ||||||||||| |||||||||
Sbjct 249 AATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACTGGGAACTGGAATATTTGTCAAGCG 308
Query 900 GCTGTTGAAACAGTGCTTCGCGGCGGTTCTTT-AAGACCGATCCCGGAGCTTCTCACTCA 958
|| ||||| || |||||||| || |||||||| || |||||| ||||||||||| | |
Sbjct 309 GCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTGAA-ACCGATACCGGAGCTTCTTA---A 364
Query 959 CGGCGGCGGTTTCGCTGGCTTTCCTTCGCCTACATCTGAAGAAGCATCTGAGATCTGCAC 1018
|||||| || ||||| || ||||| || ||||| || || ||||| |||||||| || ||
Sbjct 365 CGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGATGAAGCTTCTGAGATTTGTAC 424
Query 1019 CGAAATGTTGAATCTCCAGCAAA-ATGAT--T-CCACCGATCGTAACATCTATCATCATT 1074
|||||||||||||| | | ||| ||||| | || || ||||| || || ||||| |
Sbjct 425 GGAAATGTTGAATCTAC-GAAAAGATGATGATTCCGGTGACCGTAATATTTACCATCACT 483
Query 1075 -CACGATTCTCAAGCTCTAGATCTAGATC 1102
| |||||||||||||||||||| |||||
Sbjct 484 GC-CGATTCTCAAGCTCTAGATCCAGATC 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61896648125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5