BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67430.1
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358814 jgi|Araly1|358814|fgenesh1_pg.C_scaffold_8002601 1755 0.0
> Ahg358814 jgi|Araly1|358814|fgenesh1_pg.C_scaffold_8002601
Length=1167
Score = 1755 bits (950), Expect = 0.0
Identities = 1096/1167 (94%), Gaps = 8/1167 (1%)
Strand=Plus/Plus
Query 115 ATGGGGAAAGGATTTAACGTAGTTGTGGTGAGAGAGTATGATCCAAAGAGAGACTTAACG 174
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGAAAGGATTCAAAGTAGTTGTGGTGAGAGAGTATGATCCAAAGAGAGACTTGACG 60
Query 175 AGTGTGGAAGAGCTTGAGGAAAGCTGTGAAGTCGGATCTTTATTAGTGGATCTCATGGGT 234
|||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTGTGAAAGAGCTCGAGGAAAGTTGTGAAGTCGGATCTTTATTAGTGGATCTCATGGGT 120
Query 235 GACCCTCTTGCCCGGATCCGACAATCTCCTTCTTTCCACATGCTGGTGGCAGAGATCGGT 294
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACCCGCTTGCCCGGATCCGACAATCTCCTTCTTTCCACATGCTGGTGGCAGAGATCGGT 180
Query 295 AATGAGATAGTCGGGATGATCAGAGGAACGATCAAAATGGTGACACGTGGTGTAAATGCA 354
|| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 181 AACGAGATAGTTGGGATGATCAGAGGAACGATCAAGATGGTGACACGTGGTGGAAATGCA 240
Query 355 TTACGTCAAGCCGACGACGTTTCGCCGGAAATAAACACCACCAAACTTGCCTTCGTCTCC 414
||||||||||| | || ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 241 TTACGTCAAGCAGGCGGCGTTTTGCCGGAAATAAGCACCACCAAACTTGCCTTCGTCTCC 300
Query 415 GGCCTTAGAGTCTCTCCGTTTTACAGGAGGATGGGAATTGGACTGAAACTGGTGCAAAGA 474
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GGCCTTAGAGTCTCTCCGTTTTACAGGAGGATGGGAATTGGACTGAAATTGGTGCAAAGA 360
Query 475 CTTGAAGAGTGGTTTCTACGAAACGACGCCGTTTACTCCTACGTGCAAACTGAAAACGAC 534
|| |||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||
Sbjct 361 CTCGAAGAGTGGTTTCTACGAAACGGCGCCGTTTATTCTTACGTGCAAACCGAAAACGAC 420
Query 535 AACATAGCTTCGGTCAAACTCTTCACCGAGAAAAGTGGTTACTCCAAATTCCGTACACCA 594
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACACAGCTTCGGTCAAACTCTTCACCGAGAAAAGTGGTTACTCCAAATTCCGTACACCA 480
Query 595 ACTTTCTTGGTCAACCCGGTCTTCAACCACCGAGTCACTGTCTCTCGACGAGTCAAAATC 654
|||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 481 ACTTTCCTGGTCAACCCGGTCTTCAACCACCGAGTCACCGTCTCTCGCCGAGTCAAAATC 540
Query 655 ATCAAACTCGCTCCCTCCGACGCTGAGTCACTCTACCGCAACCGATTCTCAACCACCGAG 714
||||||||| |||||| |||||| |||||||||||||||| ||||||||| |||||||
Sbjct 541 ATCAAACTCACTCCCTACGACGCCGAGTCACTCTACCGCAGCCGATTCTCCTTCACCGAG 600
Query 715 TTTTTCCCTTCGGACATCAACTCAATCCTCACCAACAAACTCTCCCTCGGCACTTATCTG 774
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 601 TTTTTCCCTTCAGACATCAACTCAATCCTCACAAACAAACTCTCCCTCGGCACTTATTTG 660
Query 775 GCTGTGCCACGTGGAGGAGACAACGTTTCCGGGTCGTTACCCGACCAGACCGGGTCATGG 834
|| ||||||||||| | |||| | |||||||| || ||||||||||||||||||||||||
Sbjct 661 GCCGTGCCACGTGGCGAAGACCATGTTTCCGGTTCCTTACCCGACCAGACCGGGTCATGG 720
Query 835 GCCGTTATAAGTATTTGGAACAGTAAAGATGTTTACAGACTTCAAGTCAAAGGAGCGTCG 894
|||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 721 GCCGTTATAAGTATCTGGAACAGTAAAGATGTGTATAGACTACAAGTCAAAGGAGCGTCG 780
Query 895 CGTCTTAAACGCATGTTAGCTAAG-TCAACGCGCGTTTTCGACGGAGCGTTTCCGTTTTT 953
||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 781 CGTCTTAAACGCACATTAGCAAAGAT-AACGCGCGTTTTCGACGGAGCGTTTCCGTTTTT 839
Query 954 GAAAATCCCGTCGTTTCCCAATCTTTTCAAGTCGTTCGCGATGCATTTTATGTACGGTAT 1013
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 GAAAATCCCGTCGTTTCCTAATCTTTTCAAGTCGTTCGCGATGCATTTCATGTACGGTAT 899
Query 1014 CGGTGGCGAAGGGCCACGAGCGGCGGAGATGGTGGAGGCGCTTTGCTCACACGCACATAA 1073
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 CGGCGGCGAAGGGCCACGAGCGGCGGAGATGGTGGAGGCGCTTTGCTCACACGCGCATAA 959
Query 1074 CTTAGCTAGAAAAAGCGGTTGTGCCGTCGTGGCTGCTGAGGTGGCGAGCTGTGAGCCGCT 1133
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTTAGCTAGAAAAAGCGGTTGCGCCGTCGTGGCTGCTGAGGTGGCGAGCTGTGAGCCGCT 1019
Query 1134 CAGAGTTGGGATTCCACATTGGAAGGTGCTCTCGCCGGAGGATTTGTGGTGTTTGAAACG 1193
|| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1020 TAGTGTTGGGATTCCTCATTGGAAAGTGCTCTCGCCTGAGGATTTGTGGTGTTTGAAACG 1079
Query 1194 TCTCCGATA------TGACGATGACGGCGTAGACTGGACCAAGTCACCACCTGGATTGTC 1247
||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1080 TCTCCGAGACGACGGTGACGATGACGGCGTAGATTGGACTAAGTCACCACCTGGATTGTC 1139
Query 1248 TATTTTCGTTGACCCTAGAGAAATATA 1274
|||||||||||||||||||||||||||
Sbjct 1140 TATTTTCGTTGACCCTAGAGAAATATA 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56983006520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5