BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67450.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496850 jgi|Araly1|496850|fgenesh2_kg.8__2666__AT5G67450.1 1591 0.0
> Ahg496850 jgi|Araly1|496850|fgenesh2_kg.8__2666__AT5G67450.1
Length=1105
Score = 1591 bits (861), Expect = 0.0
Identities = 1044/1127 (93%), Gaps = 34/1127 (3%)
Strand=Plus/Plus
Query 23 TTCTTCTTCTTAAATAGC-TCGAAATCACATCTCACAGAATT--AAATCTTATGGCTCTC 79
|||||||||||||||| | || ||||||||||||| | |||| ||| | |||||||||
Sbjct 1 TTCTTCTTCTTAAATA-CATCAAAATCACATCTCA-A-AATTAAAAACCATATGGCTCTT 57
Query 80 GAGACTCTCAATTCTCCAACAGCTACCACCACCGCTCGGCCTCTTCTCCGGTATCGTGAA 139
||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||
Sbjct 58 GAGACTCTCAATTCTCCAACAGCCACCAGCACCGATCGTCCTCTTCTCCGGTATCGTGAA 117
Query 140 GAAATGGAGCCTGAGAATCTCGAGCAATGGGCTAAAAGAAAACGAACAAAACGTCAACGT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAAATGGAGCCTGAGAATCTCGAGCAATGGGCTAAAAGAAAACGAACAAAACGTCAACGT 177
Query 200 TTTGATCACGGTCATCAGAATCAAGAAACGAACAAGAA-C-C-TTCCTTCTGAAGAAGAG 256
|||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||
Sbjct 178 TTTGATCACGGTCATCAGAATCAAGAAACGAATAAGAATCACCTTCCTTCTGAAGAAGAG 237
Query 257 TATCTCGCTCTTTGTCTCCTCATGCTCGCTCGTGGCTCCGCCGTACAATCTCCTCCTCTT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TATCTCGCTCTTTGTCTCCTCATGCTCGCTCGTGGCTCCGCCGTACAATCTCCTCCTCTT 297
Query 317 CCTCCTCTACCGTCACGTGCGTCACCGTCCGATCACCGAGATTACAAGTGTACGGTCTGT 376
|||||||||||||||||| | |||||||||||||||||||||||||||||| | || |||
Sbjct 298 CCTCCTCTACCGTCACGTCCTTCACCGTCCGATCACCGAGATTACAAGTGTTCCGTTTGT 357
Query 377 GGGAAGTCCTTTTCGTCATACCAAGCCTTAGGTGGACACAAGACGAGTCACCGGAAACCG 436
|| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGAAAATCGTTTTCGTCTTACCAAGCCTTAGGTGGACACAAGACGAGTCACCGGAAACCG 417
Query 437 ACGAACA-CTAGTATCACTTCCGGTAACCAAGAACTGTCTAATAACAGTCACAGTAACAG 495
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACGAATAAC-AGTATCACTTCCGGTAACCAAGAACTGTCTAATAACAGTCACAGTAACAG 476
Query 496 CGGTTCCGTTGTTATTAACGTTACCGTGAACACTGGTAACGGTGTTAGTCAAAGCGGAAA 555
||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||
Sbjct 477 CGGTTCCGTTGTTATTAACGTTACCGTTAATACTAGTAACGGTGTTAGTCAAAATGGAAA 536
Query 556 GATTCACACTTGCTCAATCTGTTTCAAGTCGTTTGCGTCTGGTCAAGCCTTAGGTGGACA 615
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 GATTCACACTTGCTCGATCTGTTTCAAGTCGTTTTCGTCTGGTCAAGCCTTAGGTGGACA 596
Query 616 CAAACGGTGTCACTATGACGGTGGCAACAACGGTAACGGTAACGGAAGTAGCAGCAACAG 675
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 597 CAAACGGTGTCACTATGACGGTGGCAGTAACGGTAACGGTAACGGAAGTACCAGCAACAG 656
Query 676 CGTAGAACTCGTCGCTGGTAGTGACGTCAGCGATGTTGATAATGAGAGATGGTCCGAAGA 735
||||||| |||| ||||||||||||||||||||||| ||||| ||||||| ||| |||||
Sbjct 657 CGTAGAAGTCGTTGCTGGTAGTGACGTCAGCGATGTGGATAACGAGAGATCGTCGGAAGA 716
Query 736 AAGTGCGATCGGTGGCCACCGTGGATTTGACCTAAACTTACCGGCTGATCAAGTCTCAGT 795
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 AAGTGCTATCGGTGGCCACCGTGGATTTGACCTAAATTTACCGGCTGATCAAGTCTCAGT 776
Query 796 GACGACTTCTTAACGTTGACTGAGTTTGAGGA-AAAAGTCAACTATCAAGCGAAGAAAGG 854
||||| ||||||||||||||| ||| || ||| |||||||||||| | | | |
Sbjct 777 GACGATTTCTTAACGTTGACTCAGTATG-GGAGAAAAGTCAACTA--A-G-G--G----- 824
Query 855 GTTAGTGGACGGTGAAGATTAACGGTCGTTTCTTTCCAGTTGCTTCGGTTTGAGCTTGAC 914
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 -TTAGTGGACGGTGAAGATTAACGGTCGTTTCTTTCCAGTTGCTTCGGCTTGAGCTTGAC 883
Query 915 TGGGTCTGTAATGAAAATGATTGGAGTGGACTTGGCATTATTATTATTATTTTT--AAAA 972
|| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 884 TGAGTCTGTAATGAAAATGATTGGAGTGGACTTG-CATTATTATTATTTTTTTTTGAAAA 942
Query 973 AG-AAATGTTAATTTGTTGTTGGATTTGTTTATAGAT-AGAGGAAACAATTGGGATACAC 1030
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 943 AGGAAATGTTAATTTGTTGTTGGATTTGTTTATAGATTAGAGGAAACAATTGGGATATT- 1001
Query 1031 AAATAttttttttttttACAAAGAAAATAATAATGCAGAGATGGATGATTGGATCGTACA 1090
||| ||||||||||| || ||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1002 AAA-ATTTTTTTTTTATA-AAA-ATAATAATAATGCAGAGATGGATTATTGGATCGTACA 1058
Query 1091 CGTTATTATATAGTGGACCATTCTGTAATCGTGAATTATTATTATTT 1137
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1059 CGTTATTATATAGTGGACCATTCTGTAATCGTGAATTATTATTTTTT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5