BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67460.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496849 jgi|Araly1|496849|fgenesh2_kg.8__2665__AT5G67460.1 2049 0.0
> Ahg496849 jgi|Araly1|496849|fgenesh2_kg.8__2665__AT5G67460.1
Length=1538
Score = 2049 bits (1109), Expect = 0.0
Identities = 1422/1565 (91%), Gaps = 54/1565 (3%)
Strand=Plus/Plus
Query 1 ATGAGGCATCTTCTTTACATTTTCCTCTTCATTGCCTTTCTCAGTTTTGCAGGAGCTGGT 60
||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAGACATCTTCTTTACATTTTCTTCTTCATTGCCTTTCTCGGTTTTGCAGGAGCTGGT 60
Query 61 CAAGAATCAACACCCATTGA-AGCTCTAAACCT-CAACAACAATCTCCTTCAACTTCCTC 118
|||||||||||||||||| | ||||||||| || || | |||||||| ||||||||||||
Sbjct 61 CAAGAATCAACACCCATT-AGAGCTCTAAATCTCCATC-ACAATCTCTTTCAACTTCCTC 118
Query 119 AAACCACTGATCTTGATCTCGCTGTTTCAGTAAGTGGCAACAAAACCATCACTGAGATTT 178
|||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||
Sbjct 119 AAACCACTGATCTTGATCTCGCTGTTTCTGTGAGTGACAACAAAACCATTACTGAGATTT 178
Query 179 CCTCAAGTATCATAAAAGCTGAAACTTGGCTTAAAACCCATATCCTCTCTCGTTACCCTT 238
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 CCTCAAGTATCATAAAAGCTGAAACTTGGCTTAAAACCCATGTCCTCTCTCGTTACCCTT 238
Query 239 CCACCAAAATCACCACCATTGTTATATTTTTCCCTGATTCTTGCCAAACCACAC--AAC- 295
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 239 CCACAAAAATCACCACCATTGTTATCTTTTTCCCTGATTCTTGCCAAACCACACAAAACA 298
Query 296 -A--CAGCTCTGATCTGGTT-TTATCTTCTTTGAAAAACATATACCATTCTCTCACAAGA 351
| || |||||||| |||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct 299 AACCCACCTCTGATCCGGTTCTT-TCTTCTTTGAAAAACATTTACCATTCTCTTACAAGA 357
Query 352 TGGGGTCTCGAGAACAACATCAAAGTCTCCTCTGGCTTCTCTTACCAA-TGCTTAAACAA 410
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 358 TGGGGTCTTGAGAACAACATCAAAGTCTCCTCTGGCTTCTCTTA-CAATTGCTTAAACAA 416
Query 411 CCCAAAAAGCTCAGAAATGTTCAAACCTGTTCTCATCTTCCTCAAAACCATAAACTCAAC 470
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CCCAAAAATCTCAGAAATGTTCAAACCTGTTCTCATCTTCCTCAAAACCATAAACTCAAC 476
Query 471 TTTCACCATAAACCCACCTCAAAACTTCCTTACTTCCCCTCATAACCATCGTGATCTGCT 530
||||||||||||||||||||||||||||||| |||| ||| |||| |||| |||| ||||
Sbjct 477 TTTCACCATAAACCCACCTCAAAACTTCCTTTCTTCACCTGATAATCATCTTGATTTGCT 536
Query 531 TCATTCCGTTGAAAAGCTCGGATCTTTAAGCTTCAACAAAGTCAATTTCTTAAACCCTGA 590
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 TCATTCCGTTGAAAAGTTGGGATCTTTGAGCTTCAACAAAGTCAATTTCTTAAACCCTGA 596
Query 591 GCCAGAACAAGAATCTACAACGACGATGACAAGAAGAAATCTAAGATCTTTAGTCAACCT 650
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 597 ACCAGAACAAGAATCTACAACGACGATGACAAGAAGAAATCTGAGATCTTTAATCAATCT 656
Query 651 CAGCAGCAAATTCACAACCTCTTTCCCAACATTACCATCTCCGTCACCAGAAA-CTTCAC 709
|| |||||||||||||| |||||||||||||||||||||||| |||||||||| || |||
Sbjct 657 CACCAGCAAATTCACAATCTCTTTCCCAACATTACCATCTCCATCACCAGAAAACT-CAC 715
Query 710 CAATTCACTCCTCAATTGGATCTCCATCTCCACCTACTATACCCTATTTCCCTGAACCTT 769
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 716 CAATTCACTCCTCAATCGGATCTCCATCTCCACCTACTATACCCTATTTCTCAGAACCTT 775
Query 770 CACAATCTCCGATGGAATCAAATCAAGGGATCTCTCTTCCACCGTGCCTTCCTTATCATC 829
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 776 CACAATCTCCGATGGAATCAAATCAAGGAATCTCTCTTCCGCCGTGCCTTCCTTACCATC 835
Query 830 CAGCGCCGTCACCG-CAACCGGTAAAGAAGAAGAACGTGGAAGGGCTATGGTGCGTGGCG 888
| |||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 836 CGGCGCCGTCACCGTCA-CCGGTGAAGAAGAAGGACGTGGAAGGGCTATGGTGCGTGGCG 894
Query 889 AAACCTAGCGTAGCGGCAGAGACATTGCAACAGTCTCTGGACTTTGCGTGTGGACAAGGA 948
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 895 AAACCGAGCGTAGCGGCAGAGACATTGCAGCAATCTCTGGACTTTGCGTGTGGACAAGGA 954
Query 949 GGAGCCAATTGCGATGAGATTAAACCTCATGGTATATGTTACTATCCAGACACAGTCATG 1008
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 955 GGAGCCAATTGCGATGAGATTAAACCTCACGGGATATGTTACTATCCAGACACAGTCATG 1014
Query 1009 GCTCATGCCTCTTATGCTTTCAACAGTTATTGGCAAAAGACTAAACGAAACGGAGGTACT 1068
||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1015 GCTCACGCATCTTTTGCTTTCAACAGTTATTGGCAAAAGACTAAACGTAACGGAGGTACT 1074
Query 1069 TGCTCTTTCGGTGGAACCGCCATGCTTATCACCACTGACCCGAGTTATCAGCATTGCCGT 1128
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1075 TGCTCTTTCGGTGGAACCGCCATGCTTATCACAACTGACCCAAGTTATCAGCATTGCCGG 1134
Query 1129 TTTGTTCTGAGTTAGAGATTTGTCAGCCATTGAAGATCTGGAG------ACT--GAGAAA 1180
||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 1135 TTTGTTCTGAGTT-GAGATATGTCAGCCATTGAAGATCTGGAGTTCTGGACTCTGAGAAA 1193
Query 1181 CAACGGAAGCAAAGAAGA-ATGATGATATTAATTTACTAGTT-TAAATCAATGGT-TTAA 1237
| ||||| ||||||||| | ||||||||||||| | |||| | || | | | ||||
Sbjct 1194 CCCCGGAAACAAAGAAGATA-GATGATATTAATTAAGTAGTGATCTAT-AGTTTTGTTAA 1251
Query 1238 CTCTTTTATCATTTAGGGTTTAACTTAATTATTGTTTACTTTTAATCCGTCCTTTGGCCC 1297
| ||||||||||||||||| | ||| ||| | || ||||||| |||||||||
Sbjct 1252 TT-TTTTATCATTTAGGGTTCA-CTT--TTA------A-TT--AATCCGTTCTTTGGCCC 1298
Query 1298 ACTTG-TCACTATTAATGGGCTTTGTTTTACCGAAACCGAAATGGGCCTTATTTTAGCCC 1356
||||| | ||| |||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct 1299 ACTTGGT-ACTGTTAATGGGCTTTGTTTTACCGAGACCGGAATGGGCCTTATTGTAGGGG 1357
Query 1357 AAATGGaaaaaaaTAATCAAAAACTTATATCAGAGCCAGGTTTCGATCCTGGGACCTGTG 1416
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1358 AAACGGAAAAAAATAATCAAAAACACGTATCAGAGCCAGGTTTCGATCCTGGGACCTGTG 1417
Query 1417 GGTTATGGGCCCACCACGCTTCCGCTGCGCCACTCTGATTGTT-TTGA-ATGTTTTATAT 1474
|||||||||||||||||||||||||||||||||||||||| || |||| | |||| ||||
Sbjct 1418 GGTTATGGGCCCACCACGCTTCCGCTGCGCCACTCTGATT-TTGTTGACACGTTT-ATAT 1475
Query 1475 CCAA-GTTTTATATAAGCGTTAAATAAACCTTGGGTCGTTTGTTTTTGTTGATGGGCTTT 1533
| || ||||||||||| | ||| |||||||||| ||||||||| | |||||||||||||
Sbjct 1476 C-AACGTTTTATATAACCATTAGTTAAACCTTGGCTCGTTTGTTAT-GTTGATGGGCTTT 1533
Query 1534 TGGTC 1538
|||||
Sbjct 1534 TGGTC 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5