BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67470.1
Length=3080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951469 jgi|Araly1|951469|scaffold_803356.1 4335 0.0
> Ahg951469 jgi|Araly1|951469|scaffold_803356.1
Length=2729
Score = 4335 bits (2347), Expect = 0.0
Identities = 2620/2749 (95%), Gaps = 30/2749 (1%)
Strand=Plus/Plus
Query 105 AGTTTATCACGATTCGCCATGAAAGCTCTTCAATCCAGAttcttcttcttcttcttcttc 164
|||| ||||||||||||||||| ||||||| |||||||| |||||||||||| |
Sbjct 3 AGTTAATCACGATTCGCCATGAGAGCTCTTGAATCCAGA------TTCTTCTTCTTC-T- 54
Query 165 tacatcttcttctCAGTTTCCGTTAGTAGTGAAGC-TCATCGGAGAATCCTTCATCAGCC 223
| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 55 T-CATCTTCTTCTCAGTTTCCGTTAGTAGTGAA-CTTCATCGGAGAATCCTTCATCAGCC 112
Query 224 GCTTTTCCCGGAATCTTCTACTCCACCACCACCAGATTTCCAATCGACACCGTCTCCTCC 283
||||||||||||| |||||||||| ||||||||||||||| |||| || |||||||| ||
Sbjct 113 GCTTTTCCCGGAAACTTCTACTCCTCCACCACCAGATTTCGAATCAACGCCGTCTCCCCC 172
Query 284 TCTACCCGACACTCCCGATCAGCCATTTTTCCCGGAGAATCCTTCTACGCCTCAACAAAC 343
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TATACCAAACACTCCCGATCAGCCATTTTTCCCGGAGAATCCTTCTACGCCTCAACAAAC 232
Query 344 TCTA-TTTCCTCCTCCGCCACCTCCTGTTTCCGCCGACGTCAATGGCGGATTACCGATTC 402
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TC-AGTATCCTCCTCCGCCACCTCCTGTTTCCGCCGACGTCAATGGCGGATTACCGATTC 291
Query 403 CAACTGCTACTACTCAATCAGCCAAGCCTGGGAAAAAAGTTGCTATCGTCATTTCTGTTG 462
|||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 292 CAACAGCTACCACTCAATCAGCGAAGCCTGGGAAAAAAGTTGCAATCGTCATTTCTGTTG 351
Query 463 GAATTGTCACGCTCGGGATGCTTTCTGCTCTAGCTTTCTTCTTGTACCGTCATAAAGCCA 522
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 352 GAATTGTCACGCTTGGGATGCTTTCTGCTTTAGCTTTCTTCTTGTATCGTCATAAAGCCA 411
Query 523 AGCACGCCAGCGATACTCAGAAGCTTGTTACTGGAGGTGGCGATGGCGGCGGTTCTCGAA 582
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 412 AGCACGCGAGCGATACTCAGAAGCTTGTTAGTGGAGGTGGCGATGGCGGCGGTTCTCGAA 471
Query 583 GATTCCAGGAAGATTCAGGACCACCGACGACGACGTCTTCTACATTTCTCTATATGGGAA 642
|||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 472 GATTCCAGGAAGATCCAGGACCACCGACGACGACGTCGTCTACATTTCTCTACATGGGAA 531
Query 643 CTGTTGAACCGACCCGTGTTTCGGCGAGTGAGTCTAACGGCGGAACTAATGGACCCGTTA 702
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 532 CTGTTGAACCGAGCCGTGTATCGGCCAGTGAGTCTAACGGCGGAACTAATGGACCGGTTA 591
Query 703 ATTCGTCTCCGTACCGGAAATTGAATTCGGCTAAGAGATCGGAACGGTATAGGCCCAGTC 762
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 592 ATTCGTCTCCGTACCGGAAATTGAATTCCGCTAAGAGATCGGAACGGTATAGGCCGAGTC 651
Query 763 CGGAGCTCCAACCGCTTCCTCCGTTAGCTAAACCCCCGCAACCCTCTGATAACTCTCCGT 822
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 652 CGGAGCTTCAACCGCTTCCTCCGTTAGCTAAACCGCCGCAACCGTCTGATAACTCTCCGT 711
Query 823 CGGCTTTATCTCCTTCTTCATCATCTTCCGGTGAAGAATGCCGTGACACAGCGTTTTACA 882
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 712 CGGCTTTATCTCCTTCTTCATCATCTTCCGGTGAAGAATGCCGTGACACGGCGTTTTACA 771
Query 883 CGCCGCACGGATCTGCGATCAGCAGCGATGACGGTTACTACACCGCATTCCCTCGCTCCG 942
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 772 CGCCGCATGGATCTGCGATCAGCAGCGATGACGGTTACTACACGGCATTTCCTCGCTCCG 831
Query 943 CCAATGGATCACTTCCTCACTCGAAGAGAACATCTCCGAGGTCTAAGTTTGGATCAGCTC 1002
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CCAA---ATCACTTCCTCACTCGAAGAGAACATCTCCGAGGTCTAAGTTTGGATCAGCTC 888
Query 1003 C-GACGACGGCAGCATCTAGGTCGCCGGAGATGAAACACGTCATCATCCCGTCGATTAAG 1061
| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 889 CTG-CGACGGCAGCATCTAGGTCGCCGGAGATGAAACACGTCATCATCCCGTCAATAAAG 947
Query 1062 CAGAAACTGCCGCCACCGGTACAACCTCCGCCTCTAAGAGGCTTGGAAAGTGATGAACAA 1121
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 948 CAGAAACTGCCGCCACCAGTACAACCTCCGCCTCTAAGGGGCTTGGAAAGTGATGAACAA 1007
Query 1122 GAGCTTCCTTATTCCCAGAACAAGCCTAAGTTCTCGCAGCCACCTCCACCGCCCAATAGG 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1008 GAGCTTCCTTATTCCCAGAACAAGCCTAAGTTCTCGCAGCCACCTCCACCGCCGAACAGG 1067
Query 1182 GCGGCGTTTCAAGCCATAACTCAGGAAAAATcaccagtgccaccaccacgacggtctcca 1241
|||||||||||||| ||||||||||| | |||||||||||| | |||||| |||||||||
Sbjct 1068 GCGGCGTTTCAAGCAATAACTCAGGATAGATCACCAGTGCCTCAACCACGGCGGTCTCCA 1127
Query 1242 cctccactccagactccaccaccacctcctcctccgccgcctcttgctccgcctccacct 1301
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1128 CCTCCAGTCCAGACTCCACCACCACCACCTCCTCCTCCGCCTCTTGCTCCGCCTCCACCT 1187
Query 1302 cctcAGAAACGGCCGAGAGATTTCCAGA-TGCTACGAAAAGTCACCAATTCGGAAGCAAC 1360
|||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 1188 CCTCAGAAACGGCCGAGAGATTCCCA-ACTGCTACGAAAAGTCACCAATTCGGAAGCAAC 1246
Query 1361 AACCAATTCTACAACGTCACCTTCAAGAAAACAAGCATTCAAGACTCCAAGTCCTAAAAC 1420
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1247 AACCAATTCCACAACGTCACCTTCAAGAAAACAAGCATTCAAGACTCCAAGTCCTAAATC 1306
Query 1421 GAAGGCTGTTGAAGAGGTCAATAGCGTATCAGCAGGTTCTCTTGA-GAAATCAGGTGATG 1479
||||||||| ||||||||||||||||||||||||||||||||| | |||| ||| |||||
Sbjct 1307 GAAGGCTGTCGAAGAGGTCAATAGCGTATCAGCAGGTTCTCTTAAGGAAA-CAGATGATG 1365
Query 1480 GGGACACGGACCCAAGCAAGCCAAAGTTAAAGCCACTCCACTGGGACAAAGTACGAGCGA 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GGGACACGGACCCAAGCAAGCCAAAGTTAAAGCCACTCCACTGGGACAAAGTACGAGCGA 1425
Query 1540 GCTCAGATCGAGCCACTGTTTGGGACCAGCTCAAATCAAGCTCATTCCAATTGAACGAGG 1599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1426 GCTCAGATCGAGCCACTGTTTGGGACCAACTCAAATCAAGCTCATTCCAATTGAACGAGG 1485
Query 1600 ATAGGATGGAGCATCTGTTTGGTTGCAATTCTGGAAGTTCAGCTCCAAAGGAACCTGTGA 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 ATAGGATGGAGCATCTGTTTGGTTGCAATTCTGGAAGTTCAGCTCCAAAGGAACCTGTGA 1545
Query 1660 GAAGGTCAGTGATACCT-TTAGCTGAGAATGAGAACAGAGTGCTTGATCCAAAGAAATCG 1718
|||||||| |||| ||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 1546 GAAGGTCAATGATGCCTCCT-GCTGAGAATGAGAACAGAGTGCTGGATCCAAAGAAATCG 1604
Query 1719 CAGAACATTGCAATTCTCTTAAGAGCTCTCAATGTAACACGTGAAGAGGTTTCCGAAGCT 1778
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1605 CAGAACATTGCAATTCTCTTAAGAGCTCTCAATGTAACACGTGAAGAAGTCTCTGAAGCT 1664
Query 1779 CTCACGGATGGTAATCCAGAGAGCTTAGGTGCTGAGCTTCTAGAGACTTTGGTGAAGATG 1838
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1665 CTCACGGATGGTAATCCCGAGAGCTTAGGTGCTGAGCTTTTAGAGACTTTGGTGAAGATG 1724
Query 1839 GCTCCAACCAAGGAGGAAGAGATCAAACTGCGAGAGTACTCTGGTGATGTCTCTAAACTA 1898
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 1725 GCTCCAACAAAGGAGGAAGAGATCAAACTCCGAGAGTACTCTGGTGAAGTCTCGAAACTA 1784
Query 1899 GGAACAGCTGAAAGATTCCTCAAAACCATTCTCGATATCCCTTTTGCCTTCAAAAGAGTT 1958
|| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1785 GGGACAGCTGAAAGATTCCTTAAAACCATTCTTGATATCCCTTTTGCCTTTAAAAGAGTT 1844
Query 1959 GAAGCAATGTTGTATAGAGCCAACTTTGATGCAGAAGTCAAGTATCTAAGAAACTCTTTC 2018
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1845 GAAGCAATGTTGTATAGAGCCAACTTTGATGCAGAAGTCAAATATCTAAGGAACTCTTTC 1904
Query 2019 CAGACATTAGAGGAAGCAAGCTTGGAACTAAAAGCAAGCAGACTATTCCTAAAGCTCCTC 2078
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1905 CAGACATTAGAGGAAGCAAGCTTAGAACTAAAAGCAAGCAGACTATTCCTAAAGCTCCTT 1964
Query 2079 GAGGCTGTTC-TAATGACGGGAAACCGAATGAACGTTGGCACGAATCGCGGAGATGCCAT 2137
||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1965 GAGGCTG-TCTTAATGACTGGAAACCGAATGAACGTTGGCACGAATCGGGGAGATGCCAA 2023
Query 2138 AGCCTTCAAACTCGATACGCTTTTAAAACTTGTAGACATCAAAGGAGTTGATGGCAAAAC 2197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 AGCCTTCAAACTCGATACGCTTTTAAAACTTGTAGACATCAAAGGAGTTGATGGCAAAAC 2083
Query 2198 CACATTGCTTCATTTTGTCGTCCAAGAAATCACAAGATCCGAGGGAACAACGACAACAAA 2257
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 2084 CACATTGCTTCATTTTGTCGTCCAAGAAATCACAAGAACTGAGGGAACAACAACAACAAA 2143
Query 2258 AGATGAAACCATCCTCCATGGAAACAATGACGGTTTCAGAAAGCAAGGATTACAAGTAGT 2317
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 AGACGAAACCATCCTCCATGGAAACAATGACGGTTTCAGAAAGCAAGGATTACAAGTAGT 2203
Query 2318 TGCTGGACTCAGTAGAGATCTGGTTAATGTGAAAAAATCAGCCGGAATGGATTTCGATGT 2377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 TGCTGGACTCAGTAGAGATCTGGTTAATGTGAAAAAATCAGCCGGAATGGATTTCGATGT 2263
Query 2378 ACTGAGCAGTTACGTGACAAAGCTCGAAATGGGTCTTGATAAACTCCGATCATTTCTCAA 2437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2264 ACTGAGCAGTTACGTGACAAAGCTCGAAATGGGTCTTGATAAACTCCGATCATTTCTCAA 2323
Query 2438 GACAGAGACAACTCAAGGGAGGTTCTTTGATTCGATGAAAACGTTTCTCAAAGAAGCAGA 2497
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2324 GACAGAGACAACTCAAGGGAAGTTCTTTGATTCGATGGAAACGTTTCTCAAAGAAGCAGA 2383
Query 2498 GGAAGAGATCCGAAAGATTAAAGGAGGAGAAAGAAAAGCTTTGTCAATGGTGAAAGAAGT 2557
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2384 GGAAGAGATCCGAAAGATCAAAGGAGGAGAAAGAAAAGCTTTGTCAATGGTCAAAGAAGT 2443
Query 2558 AACAGAGTATTTCCACGGAAACGCTGCGAGAGAAGAAGCACATCCTTTAAGAATCTTCAT 2617
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2444 AACAGAGTATTTCCATGGAAACGCTGCGAGAGAAGAAGCACATCCTTTAAGAATCTTCAT 2503
Query 2618 GGTGGTGAGAGATTTTCTCGGAGTTCTCGATAACGTTTGTAAAGAAGTGAAGACGATGCA 2677
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2504 GGTCGTGAGAGATTTTCTCGGAGTTCTCGATAATGTTTGTAAAGAAGTGAAGACGATGCA 2563
Query 2678 AGAAATGTCGACATCGATGGGTTCAGCTTCAGCTAGATCGTTCAGGATTTCAGCAACAGC 2737
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2564 AGAAATGTCGACGTCCATGGGTTCAGCTTCAGCTAGATCGTTCAGGATTTCAGCAACAGC 2623
Query 2738 TTCGTTACCGGTTCTTCATAGGTATAAAGCAAGACAAGACGACACAAGCTCGGATAGTGA 2797
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2624 TTCATTACCGGTTCTTCATAGGTATAAAGCAAAACAAGACGACACAAGCTCGGATAGTGA 2683
Query 2798 ACACAGCAGCAACTCTTCTACGTGAT-GaaaaaacaaaaaGCTGTACAG 2845
|||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 2684 ACACAGCAGCAACTCTTCTACGTGATTGAAA---CAAAAAGCTGTACAG 2729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116327608230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5