BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67480.2
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496846 jgi|Araly1|496846|fgenesh2_kg.8__2662__AT5G67480.1 2025 0.0
> Ahg496846 jgi|Araly1|496846|fgenesh2_kg.8__2662__AT5G67480.1
Length=1489
Score = 2025 bits (1096), Expect = 0.0
Identities = 1207/1262 (96%), Gaps = 2/1262 (0%)
Strand=Plus/Plus
Query 232 AGGGAAGAGAAGATAAGCTAAACAAGAGAATGGTGACAGGTTGTGTT-GATCTTCATCAA 290
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 229 AGGGAAGAGAAGATAAGCTAAACAAGAGAATGGTGACTGGTTGT-TTGGATCTTCATCAA 287
Query 291 TCTTTCAAATCTGCAGATTCATCTTCTGTGCCAATTCCTCCTCCTCTTCCATCAAAATCT 350
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 288 TCCTTCAAATCTGCAGATTCATCTTCTGTGCCCATTCCTCCACCTCTTCCATCAAAATCT 347
Query 351 GATGGACTCAAGAAAAAACTTGGGCATAGCAGCGTTTCGACAGCCACAAGAGATATGTGG 410
||||||| |||||||| ||| |||| |||| |||||||||||||||||||||||| ||||
Sbjct 348 GATGGACACAAGAAAAGACTCGGGCCTAGCTGCGTTTCGACAGCCACAAGAGATACGTGG 407
Query 411 GATCGTCTTTTCAATGACGGATACAAAGCTGATGTAGTCATCTATACAGATAATGGCAGT 470
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 408 GATCGTCTTTTCAATGATGGATACAAAGCTGATGTAGTGATCTATACAGATAATGGCAGC 467
Query 471 ATCATCTATGCTCATGCCAACATCCTTGGAACTGCTTCCACTGTGATCAAAGGCATGTTG 530
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 468 ATCATCTATGCTCATGCCAACATCATTGGAACTGCTTCCACTGTGATCAAAGGCATGTTG 527
Query 531 AAGCAAGCCAAGAGACATGGCAAGTGGCATACAATATCAATCCGAGGTGTCCCTCATGAT 590
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 528 AAGCAAGCCAAGAGACATGGCAAGTGGCATACAATCTCGATCCGCGGTGTCCCTCACGAT 587
Query 591 GCTGTGCGAGTTTTTATCCGTTTCCTCTACTCTTCTTGCTATGAGAAAGAAGAAATGAAC 650
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GCCGTGCGAGTTTTTATCCGTTTCCTCTACTCTTCTTGCTATGAGAAAGAAGAAATGAAC 647
Query 651 GAGTTTATCATGCATTTGCTACTTCTGTCACACGCGTACGTGGTTCCTCAGCTGAAACGG 710
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 648 GAGTTTATCATGCATTTGTTACTTCTGTCGCACGCGTATGTGGTTCCTCAGCTGAAACGG 707
Query 711 GTCTGTGAATGGCATCTAGAACATGGTTTGCTTACCACTGAGAATGTGGTTGATGTGTTC 770
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 708 GTCTGTGAATGGCATCTGGAACATGGTTTGCTTACCACTGAGAATGTGATTGATGTGTTC 767
Query 771 CAGCTTGCGCTGCTGTGTGATTTCCCTCGGCTTAGCCTCATATCTCACCGTATGATCATG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CAGCTTGCGCTGCTGTGTGATTTCCCTCGGCTTAGCCTCATATCTCACCGTATGATCATG 827
Query 831 AAACACTTTAACGAACTCTCTGCGACAGAAGCATGGACAGCTATGAAGAAAAGCCATCCC 890
||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AAACACTTTAAGGAGCTTTCTGCGACAGAAGCATGGACAGCTATGAAGAAAAGCCATCCT 887
Query 891 TTTCTTGAGAAAGAAGTTAGAGACTCAGTAATCATCGAAGCAAATACGCGGAAAGAGAGG 950
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 888 TTTCTTGAGAAAGAAGTTAGAGACTCAATGATCATCGAAGCAAATACGCGGAAAGAGAGG 947
Query 951 ATGAGAAAACGCAATGATCAGAGGATATATTCGCAGCTATACGAAGCAATGGAAGCACTT 1010
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 948 ATCAGAAAACGCAATGATCAGAGGATATATTCGCAGCTATACGAAGCAATGGAAGCTCTT 1007
Query 1011 GTTCATATATGCAGAGATGGATGTAAAACAATAGGGCCACACGATAAAGATTTCAAACCG 1070
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1008 GTTCATATATGCAGAGACGGATGTAAAACAATAGGACCACATGATAAAGATTTAAAACCG 1067
Query 1071 AACCATGCAACGTGTAACTATGAAGCTTGCAAGGGATTAGAATCACTGATCCGGCATTTC 1130
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GACCACGCACCGTGTAACTATGAAGCTTGCAAGGGATTAGAATCACTGATCCGGCATTTC 1127
Query 1131 GCAGGCTGTAAGCTAAGAGTTCCAGGAGGTTGCGTGCATTGCAAGAGAATGTGGCAACTC 1190
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GCAGGCTGTAAGCTTAGAGTTCCAGGAGGTTGCGTGCATTGCAAGAGAATGTGGCAACTC 1187
Query 1191 CTTGAACTGCATTCACGTGTTTGCGCAGGTTCTGATCAATGTCGAGTCCCTCTATGCAGA 1250
|||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1188 CTTGAATTGCATTCACGTGTTTGCGCTGATTCTGATCAATGTCGAGTCCCTCTATGCAGA 1247
Query 1251 AACCTTAAGGAGAAGATGGAGAAACAGAGCAAGAAAGATGAGTCGAGATGGAAACTTCTG 1310
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1248 AACTTTAAGGAGAAGATGGAGAAACAGAGCAAGAAAGATGAATCGAGATGGAAACTTCTG 1307
Query 1311 GTGAAGAATGTATTGGGGAGTAAGAAAATCGGAGGCTCTCCTTTCTTTTTACCGGTGACA 1370
||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1308 GTGAAAAATGTACTGGGAAGTAAGAAAGTCGGAGGCTCTCCTTTCTTTTTACCGGTGACA 1367
Query 1371 AACTGTTAAAAAACATTTTGTCAATCTCAAGAAGGGCGAGTTTTAAGCGTTTCTTGTGAT 1430
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AGCTGTTAAAAAACATTTTGTCAATCTCAAGAAGGGCGAGTTTTAAGCGTTTCTTGTGAT 1427
Query 1431 CCTATCTTTAAAACAAGTGTAACATAATGAGTTTGAATAAATGACACATATTTTGGTCGG 1490
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1428 CCTATCTTAAAAACAAGTGTAACATAATGAATTTGAATAAATGACACATATTGTGGTCGG 1487
Query 1491 CC 1492
||
Sbjct 1488 CC 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5