BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G67488.1

Length=643
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951466 jgi|Araly1|951466|scaffold_803353.1                        453    7e-127


> Ahg951466 jgi|Araly1|951466|scaffold_803353.1
Length=370

 Score =  453 bits (245),  Expect = 7e-127
 Identities = 321/356 (90%), Gaps = 12/356 (3%)
 Strand=Plus/Minus

Query  129  GATACATGAATCCTCTCAGAAATCAGAGCATCGACCACGTTGTTCCCAATCGCCGTACCG  188
            ||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  364  GATTCATGAATCGTCTTAGAAATCGGAGCATCGACCACGTTGTTCCCAATCGCCGTACCG  305

Query  189  AGTCGGTTCAGGACCTCTAGGCCCTCCAATCTCACCAGTATCTTCGTTCACAAActctcc  248
            |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  304  AGTCGGCTCAGGACCTCTAGGTCCTCCGATCTCACCAGTATCTTCGTTCACAAACTCTCC  245

Query  249  acctccaccaccttctccttcctcttcttcttccttctGCATCTGCAGATTCTGTTGAAG  308
            ||||||  | |||||| ||||| |||||||||| || | | |  ||||||||||||||||
Sbjct  244  ACCTCCTTCTCCTTCTTCTTCCCCTTCTTCTTC-TT-T-C-T--GCAGATTCTGTTGAAG  191

Query  309  ATTCTGATCTGGCTTCACGTCCCGGTTCAGATCCTGATTCGGAGA------TGGAGCTTG  362
            |||||||||||||||||||| ||||||||||||| ||||||||||      |||||| ||
Sbjct  190  ATTCTGATCTGGCTTCACGTTCCGGTTCAGATCCAGATTCGGAGACGGGGATGGAGCCTG  131

Query  363  CGGCGGAGGAGGTGTACCGGAGCTTAGAAACCGTGACACTGGCTCGAGGAATCTAGAGGA  422
            |||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct  130  CGGCGGAGGAGGAGTACCGGAGCTTAAAAACCGTGACACTGGCTGGAGCAATCTAGAGGA  71

Query  423  GACGGATCGGCTTGGAGCGATCAAACGTACGATGTTGTTCGTCGCCATTGTTAGAT  478
            | |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  70   GGCGGATCCGCTTGGTGCGATCAAACGGACGATGTTGTTCGTCGCCATTGTTAGAT  15



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559962706


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5