BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67500.2
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496845 jgi|Araly1|496845|fgenesh2_kg.8__2661__AT5G67500.1 1419 0.0
> Ahg496845 jgi|Araly1|496845|fgenesh2_kg.8__2661__AT5G67500.1
Length=1075
Score = 1419 bits (768), Expect = 0.0
Identities = 857/899 (95%), Gaps = 10/899 (1%)
Strand=Plus/Plus
Query 278 GGCCCTTACGTCTACTGCTCTGAAGAAAGGAGGAGTTCATGCTGCTGATGTTGCCACCCA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGCCCTTACGTCTACTGCTCTGAAGAAAGGAGGAGTTCATGCTGCTGATGTTGCCACCCA 237
Query 338 ATACAAGTACAAGAATGCTTTGTTTGATGTTAAAATCGACACTGATTCTAGTGTTTTGAC 397
|||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 238 ATACAAGTACAAGAATGCTTTGTTCGGTGTCAAAATTGACACTGATTCTAGTGTTTTGAC 297
Query 398 AACAGTCACACTTACCGAGATCCTCCCATCAACAAAAGCCATTGCCTCCTTCAAAGTCCC 457
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACAGTCACACTCACCGAGATCCTCCCATCAACAAAAGCCATTGCCTCCTTCAAAGTCCC 357
Query 458 TGATTATAATTCCGCCAAGCTCGAGGTGCAATACTTCCACGACCACGCAACAGTTACCGC 517
||||| |||||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 358 CGATTACAATTCCGCAAAGCTTGAGGTCCAATACTTCCATGACCATGCAACAGTCACCGC 417
Query 518 TGCTGCAGCTTTGAAACAAAACCCACTAATTGACATAACAGCTACTCTTGGTTCGCCAGT 577
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 TGCTGCAGCTTTGAAACAAAACCCGCTAATTGACATAACAGCTACTCTTGGTTCGCCAGT 477
Query 578 CATCTCATTTGGTGCTGAAGCTGGATATGACACAACCTCCAAAACTTTCACCAAGTACAA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CATCTCATTTGGTGCTGAAGCTGGATATGACACAACCTCCAAAACTTTCACCAAGTACAA 537
Query 638 TGCCGGGATCAGTGTGACAAAACCAGATGCTTGCCTCTCCATAATATTGGGAGACAAAGG 697
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 538 TGCCGGGATCAGTGTGACAAAACCTGACGCTTGCCTTTCCATAATATTGGGAGACAAAGG 597
Query 698 AGACTCACTCAAAGCATCATACCTTCATCACTTTGATGAATTTAAGAGAACCGCAGCAGT 757
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGACTCACTCAAAGCATCTTACCTTCATCACTTTGATGAATTTAAGAGAACCGCAGCAGT 657
Query 758 TGGTGAGGTTTACAGGAAGTTCTCGACAAATGAAAACACGATAACGGTTGGTGGATTGTA 817
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGGTGAGGTTTACAGGAAATTCTCGACAAATGAAAACACGATAACGGTTGGTGGATTGTA 717
Query 818 TGCGATTGATCATTCGACTGCAGTGAAAGCTAAGCTCAACAACCATGGCACACTTGGTGC 877
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 718 TGCGATTGATCATTCGACTTCAGTGAAAGCTAAGCTGAACAACCATGGCACACTTGGTGC 777
Query 878 TCTTCTGCAGCACGAGGTCCTGCCCAGATCACTAGTGACTGTTTCCAGTGAGATTGACAC 937
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCTTCTCCAGCACGAGGTCCTGCCCAGATCACTAGTGACTGTTTCCAGTGAGATTGACAC 837
Query 938 TAAGGCTTTAGAAAAGCATCCAAGGTTTGGTCTCTCTCTTGCTCTCAAACCTTGAGAACA 997
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CAAGGCTTTAGAAAAGCATCCAAGGTTTGGTCTCTCTCTTGCTCTCAAACCTTGAGAACA 897
Query 998 CACAC--------TCACATCAGACCTGCTTGAGTCTTCCTACTTTTCTCGTATGCTCTCA 1049
||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 CACACACACACACTCACATCAGACCTGCTTGAGTCTTCCTTCTTTTCTCGTATGCTCTCA 957
Query 1050 TTGTTGATTTCCTCTACGGCAGGACGTGAGAGTTAGCGtttttttcctccttttttCCTT 1109
||||||||||| |||||||| |||| ||||||| ||||||||| || |||||||| |||
Sbjct 958 TTGTTGATTTCTTCTACGGCTGGACCCGAGAGTTTGCGTTTTTTCCC-CCTTTTTTTCTT 1016
Query 1110 -ACGTTTAATTGGAATCAATAAATAGTTCCGCAGTGAAATTGACGGATAATTCtttttt 1167
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CACGTTTAGTTGGAATCAATAAATAGTTCCGCAGTGAAATTGACGGATAATTCTTTTTT 1075
Score = 316 bits (171), Expect = 2e-85
Identities = 178/181 (98%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 18 GTCGTAATTCTTCTATCTTGATATCTTCACCGCCTGCCGATCTCTCTCAATCTCCGATCA 77
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1 GTCGTAATTCTTCTATCTTGATATCTTCACCGCCTGCCGATCTCTC-C-ATCTCCGATCA 58
Query 78 ACCATGAGCAAAGGTCCAGGACTCTTCACCGATATCGGCAAGAAAGCCAAAGATCTGTTG 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACCATGAGCAAAGGTCCAGGACTCTTCACCGATATCGGCAAGAAAGCCAAAGATCTGTTG 118
Query 138 ACGAGAGACTACAATTCCGATCAGAAGTTCAGTATCTCCACTTACAGTGCCTCCGGCGTG 197
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACGAGAGACTACAATTCTGATCAGAAGTTCAGTATCTCCACTTACAGTGCCTCCGGCGTG 178
Query 198 G 198
|
Sbjct 179 G 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5