BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67510.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496844 jgi|Araly1|496844|fgenesh2_kg.8__2660__AT5G67510.1 929 0.0
> Ahg496844 jgi|Araly1|496844|fgenesh2_kg.8__2660__AT5G67510.1
Length=618
Score = 929 bits (503), Expect = 0.0
Identities = 582/619 (94%), Gaps = 9/619 (1%)
Strand=Plus/Plus
Query 19 ATTTCTTCACAAATTCAGCGGCGATGAAGTTCAATCCGCGTGTGAGCTCTTCTCGCCGGA 78
|||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 ATTTTTTCACAAATTCGGCGGCGATGAAGTACAATCCGCGTGTGACCTCTTCTCGCCGGA 60
Query 79 AGAACAGGAAGGCTCACTTCACAGCTCCTTCAAGCGTGAGGCGCGTTCTCATGAGCTCGC 138
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAACAGGAAGGCTCACTTTACAGCTCCTTCAAGCGTGAGGCGCGTTCTCATGAGCTCGC 120
Query 139 CGTTATCCAAGGATCTCCGT-AACAAACACAACGTCAGATCCATGCCGATTCGTAAAGAC 197
|||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 121 CGTTATCCAAAGATCTCCGTCAA-AAATACAACGTCAGATCCATGCCGATTCGTAAAGAC 179
Query 198 GACGAAGTGCAAGTTGTTCGTGGGACGTTCAAGGGAAGAGAAGGGAAGGTGATGCAGGTG 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACGAAGTGCAAGTTGTTCGTGGGACGTTCAAGGGAAGAGAAGGGAAGGTGATGCAGGTG 239
Query 258 TATCGCCGCAAGTGGGTGATTCACATCGAGAGAATCACAAGGGAGAAAGTCAACGGATCC 317
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 TACCGACGCAAGTGGGTGATTCACATCGAGAGAATCACAAGGGAGAAAGTCAACGGAACG 299
Query 318 ACGGTCAACGTCGGAGTCAATGCTTCGAATGTGATGATCACTAAGCTCCGTCTCGATAAG 377
||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||||
Sbjct 300 ACGGTCAACGTCGGAATCCAGGCTTCGAATGTGATGATCACCAAGCTCCGTCTCGATAAG 359
Query 378 GATAGGAAGTCGCTTTTGGAGCGTAAGGCTAATGGACGCGCCGCCGCCGATAAGGAGAAG 437
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 GATAGGAAGTCGCTTTTGGAGCGTAAGGCTAATGGACGCGCCGCCGCGGATAAGGAGAAG 419
Query 438 GGAACCAAGTTTTCAGCCGAAGATGTCATGGAGAACGTAGATTGATCTTAACGTAT-GGt 496
||||||||||||||||| | |||||| |||||||||||||||||| || |||||| |||
Sbjct 420 GGAACCAAGTTTTCAGCGGCAGATGTTATGGAGAACGTAGATTGAGATTGACGTATTGGT 479
Query 497 tttttctt-ctt-cttttctagttttctattttgatttcATTGATGATGATATGATTCAG 554
||||| || ||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 TTTTTTTTTCTTTCTTT-CTAGTTTTCTATTTTGATTTCAAGGATGATGATATGATTCAG 538
Query 555 AATTCGAAGTTGAATTTTGTGGTTTTCTTATCAATGTACC-TCATTTATGC-TT-ATATT 611
|||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||
Sbjct 539 AATTCGAAGTTGAATTTTGTGGTTTTGGTATCAATGTACCATCATTTATGCCTTTATATT 598
Query 612 TCTAGCTATTGAAATTGGA 630
||||||||||||||||||
Sbjct 599 ACTAGCTATTGAAATTGGA 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5