BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67520.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496843 jgi|Araly1|496843|fgenesh2_kg.8__2659__AT5G67520.1 1399 0.0
> Ahg496843 jgi|Araly1|496843|fgenesh2_kg.8__2659__AT5G67520.1
Length=1202
Score = 1399 bits (757), Expect = 0.0
Identities = 1073/1213 (88%), Gaps = 72/1213 (6%)
Strand=Plus/Plus
Query 43 ACCGACTTAAAATATTAATTT-AAGATCGTTAAAAAAC-AAACTCTACAA--GTTTT-TG 97
||||||||||||||| ||||| ||||||||| |||||| ||||| ||||| ||||| ||
Sbjct 2 ACCGACTTAAAATATAAATTTAAAGATCGTT-AAAAACAAAACTGTACAATTGTTTTCTG 60
Query 98 ATTTCAGAGTCCACCGTTGAGCCTGTTCAATTAAATCGTTGAATCTCGCGGTG-CGTTTT 156
| |||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 61 A-TTCAGAGTTCACCGTTGAGCGTGTTCAATTAAATCGTTGAATCTCGCGGTGCCATTTT 119
Query 157 ACTTTGATTCTTTCGAAttttttttATATGGATGTTGCCGCGATGGCGAGATGTGTGGGA 216
|| ||| ||||||||||| ||| |||||||||| |||||||| ||||||||||||| |||
Sbjct 120 ACGTTGCTTCTTTCGAATCTTTCTTATATGGATATTGCCGCGGTGGCGAGATGTGTTGGA 179
Query 217 AGGTGCTACGTTTCGCCGGCGTTCGGTGAGTCTGAATCGC-ACCGGTTATCGGAGCGGCG 275
|||||||| ||||||||||||||||| || || ||| | | ||||||||||||||||||
Sbjct 180 AGGTGCTATGTTTCGCCGGCGTTCGGAGAATCCGAA-CCCTTCCGGTTATCGGAGCGGCG 238
Query 276 GTTTCTGAAATTGTCTAGCTCCACGAATTCGGATCCCGCCGGTAGTAAAAGTTTGA-AGC 334
|||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| |
Sbjct 239 GTTTCTGAAATTTTCTTGCTCCACGAATTCGGATCCCACCGGTAGTAGAAGTTTGATA-T 297
Query 335 TTCGCGGGAAAATTCATCGGAGA-ATGAGCTACTTCCGTCCGATCATGGCAAAAGATGAA 393
|| ||||||||| ||| |||||| || ||| |||||||||||||||||| | |||||||
Sbjct 298 TTGGCGGGAAAAGTCACCGGAGACTTG-GCTTCTTCCGTCCGATCATGGCGACAGATGAA 356
Query 394 TCCATTTCATCGC-G------G--T---CCGGTGAAACGAAGCAAATCAATGGAAAGCAA 441
|| |||||||||| | | | |||||||||| ||||||||||| |||||||||
Sbjct 357 TCGATTTCATCGCGGTCCTCTGATTGCGCCGGTGAAACAAAGCAAATCAACGGAAAGCAA 416
Query 442 AAGAACATTGTCTGGCATGATTGTCCCGTTACTAAATCCGACAGGCAAGAATTAATTAAG 501
||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||
Sbjct 417 AAGAACATTGTCTGGCATGATTGTCCCGTTACTCAATCAGACAGGCAAAAATTGATTAAG 476
Query 502 CAAAAGGGATGTGTGATTTGGATTACTGGCTTAAGTGGTTCAGGTAAAAGTAGTCTGGCA 561
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAAAAGGGATGTGTTATTTGGATTACTGGCTTAAGTGGTTCAGGTAAAAGTAGTCTGGCA 536
Query 562 TGTGCTCTTAGTCGAGCTTTGCACAATCGTGGAAAGCTTTCGTATATACTTGATGGTGAC 621
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 537 TGTGCTCTTAGTCGAGCTTTGCACAGTCGTGGAAAGATTTCGTATATACTTGATGGGGAC 596
Query 622 AATGTTCGACATGGTTTAAACAGCGATCTTAGTTTCGAAGCAGATGATCGAGCTGAAAAC 681
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 AATGTTCGACATGGTTTAAACAGCGATCTTAGTTTCGAAGCAGAAGATCGAGCTGAAAAT 656
Query 682 ATTCGAAGAGTTGGTGAAGTGGCTAAACTGTTTGCAGATTCTGGTATTATCTGTATTGCA 741
||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 657 ATTAGAAGAGTTGGTGAAGTGGCTAAACTGTTTGCAGATGCTGGTATAATCTGTATTGCA 716
Query 742 AGTTTAATATCTCCTTACCGGATAGAACGAGCTGCCTGCCGTGCATTATTACCAC-AAGG 800
||||| |||||||||||||| | |||||||||||| ||||||||||| |||| | ||||
Sbjct 717 AGTTTGATATCTCCTTACCGCAGAGAACGAGCTGCTTGCCGTGCATTGCTACC-CGAAGG 775
Query 801 AGATTTCATTGAGGTATTTATGGATGTGCCACTCCATGTTTGTGAAGCTAGAGATCCAAA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGATTTCATTGAGGTATTTATGGATGTGCCACTCCATGTTTGTGAAGCTAGAGATCCAAA 835
Query 861 GGGCTTATACAAACGTGCACGCGCTGGTAAAATCAAAGGTTTTACAGGAGTAGATGATCC 920
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 836 GGGCTTATACAAACGTGCACGTGCTGGGAAAATCAAAGGTTTTACAGGAGTAGATGATCC 895
Query 921 ATATGAAGCGCCTTTGGATTGCGAGATTGTAATACAAAACAGTAGAGACAAGGGGctttc 980
||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | |
Sbjct 896 ATATGAACCGCCTTTGGATTGCGAGATTGTGATACAAAACAACAGAGACAAGGG--T--C 951
Query 981 ttcttcatcttcatcttcatcttcaccttcatcttcgtcttcttctctGTGTGAAATGGC 1040
|| | | | | | | | ||||||| | | | | | | | | || || ||||||||||||
Sbjct 952 TT-T-C-T-T-C-T-T-CATCTTC-C-T-C-T-T-C-T-T-CT-CT--GTGTGAAATGGC 991
Query 1041 AGATATTGTTGTGTCGTACTTGGACCAAAATGGATACCT---GA------AGAAACACTC 1091
||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 992 AGAGATTGTTGTATCGTACTTGGACCAAAATGGATACCTCCAGACGCCTTAGAAACACTC 1051
Query 1092 CACAAAATCACGTAATTGTAT---------GTAAATGTAATATTAATATCATTGTTGTAA 1142
||||||||||| ||||||||| || ||||| ||| ||| |||||||||||||
Sbjct 1052 CACAAAATCACATAATTGTATACTTTCCTTGTGAATGTGATACTAAAATCATTGTTGTAA 1111
Query 1143 CGTTTCTTAAACCTATTTTACCTATGGACGATTAAATTGTGAAAACATAAATGTAATTCA 1202
||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| | ||
Sbjct 1112 CGTTTCTTAAACCTATTTTACCTTTGGATGATTAAATTGTGAAAACATCAATGTA-T-CA 1169
Query 1203 CAATCTGCAAAGA 1215
|||||||||||||
Sbjct 1170 CAATCTGCAAAGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5