BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67530.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496842 jgi|Araly1|496842|fgenesh2_kg.8__2658__AT5G67530.1 3134 0.0
> Ahg496842 jgi|Araly1|496842|fgenesh2_kg.8__2658__AT5G67530.1
Length=1962
Score = 3134 bits (1697), Expect = 0.0
Identities = 1850/1926 (96%), Gaps = 2/1926 (0%)
Strand=Plus/Plus
Query 66 GAAGAAGTGAACGATGGGGAAGAAACAACACAGCAAAGATCGGATGTTCATAACGAAGAC 125
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGAAGTAAACAATGGGGAAGAAACAACACAGCAAAGATCGGATGTTCATAACGAAGAC 60
Query 126 GGAGTGGGCAACAGAATGGGGAGGCGCTAAATCCAAAGAGAATCGAACTCCTTTCAAGAG 185
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GGAGTGGGCAACAGAATGGGGAGGCGCTAAATCCAAAGAGAATCGTACTCCTTTCAAGAG 120
Query 186 TCTTCCTTACTATTGCTGCGCGCTTACGTTTTTGCCATTCGAAGATCCTGTGTGTACAAT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTTCCTTACTATTGCTGCGCGCTTACGTTTTTGCCATTCGAAGATCCTGTGTGTACAAT 180
Query 246 CGACGGGAGTGTTTTCGAGATAACAACAATAGTGCCTTACATTAGGAAATTTGGAAAACA 305
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||
Sbjct 181 CGACGGGAGTGTTTTCGAGATAACAACTATAGTGCCTTACATTCGGAAATTTGGGAAGCA 240
Query 306 TCCTGTTACTGGAGCTCCATTGAAAGGAGAAGATCTAATTCCTCTCATCTTTCACAAGAA 365
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCAGTTACAGGAGCTCCATTGAAAGGAGAAGATCTAATTCCTCTCATCTTTCACAAGAA 300
Query 366 CTCTGAAGGAGAGTATCATTGTCCTGTTCTAAACAAAGTCTTCACTGAATTTACACATAT 425
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CTCTGAAGGAGAGTATCATTGTCCTGTTCTAAACAAAGTCTTTACTGAATTTACACATAT 360
Query 426 TGTTGCTGTCAAGACTACTGGAAATGTATTCTGCTACGAGGCAATCAAAGAGTTGAATAT 485
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 AGTTGCTGTCAAGACTACCGGAAATGTATTCTGCTACGAGGCAATCAAAGAGTTAAATAT 420
Query 486 CAAAACCAAGAATTGGAAGGAGCTTTTAACTGAAGAACCATTTACAAGAGCCGACCTTAT 545
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 421 CAAAACCAAGAATTGGAAGGAGCTTTTAACAGAAGAACCATTCACAAGAGCCGACCTTAT 480
Query 546 AACAATTCAGAATCCTAATGCAGTTGATGGTAAAGTGACGGTGGAGTTTGATCATGTTAA 605
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 AACAATTCAGAATCCTAATGCAGTTGACAGTAAAGTGACGGTGGAGTTTGATCATGTTAA 540
Query 606 AAACGGTCTTAAGATCGATGATGAAGAGTTGAAAAAGATGAACTCAGACCCTGCTTATAA 665
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 AAATGGCCTTAAGATCGATGATGAAGAGTTGAAAAAGATGAACTCAGACCCAGCTTATAA 600
Query 666 TATAAACGTGTCTGGAGATATCAAGCACATGCTTGCAGATCTTGGAACTGATAAAGCTAA 725
||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 601 TATAAACGTGTCTGGAGATATCAAGCAGATGCTTGCGGATCTTGGAACCGAAAAAGCTAA 660
Query 726 AGAGATTGCTTTACATGGTGGAGGTGGAAACAAGGCACGTAATGAAAGAGCCGCTGCTAT 785
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 AGAGATTGCTTTACATGGTGGAGGTGGAAACAAGGCACGTAATGAAAGGGCCGCTGCTAT 720
Query 786 TGCTGCGATTCTGGAGTCAAGATCGAAAATCAAAGAGGTTTCTAAAGCAGAACAACCGAA 845
|||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 TGCTGCGATTCTAGAGTCTAGATCGAAAATCAAAGAGGATTCTAAAGCAGAACAACCGAA 780
Query 846 ACAGACCTACAGTGTTGTTGATGCTGCATCTGCTTCGGTTTTTGGAAGAAGTGCTGATGC 905
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAGACCTACAGTGTTGTGGATGCTGCATCTGCTTCGGTTTTTGGAAGAAGTGCTGATGC 840
Query 906 AGCTAAAGCTGGTTCTAGTGATAAAACAGCTGCAAGAATAGCTATGCATATGGCTGGAGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGCTAAAGCTGGTTCTAGTGATAAAACAGCTGCAAGAATAGCTATGCATATGGCTGGAGA 900
Query 966 TAGAACACCTGTTAATTCTAAAATGGTGAAGAGCCGTTATTCGTCGGGTGCTGCTTCTCG 1025
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TAGAGCACCTGTTAATTCTAAAATGGTGAAGAGCCGTTATTCGTCGGGTGCTGCTTCTCG 960
Query 1026 TTCTTTCACTTCCTCTGCCTTTACTCCTGTAACCAAAAACGATTTTGAACTAATTAAAGT 1085
||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 961 TTCTTTCACTTCCACTGCATTTACTCCTGTAACTGAAAACGATTTTGAACTAATTAAAGT 1020
Query 1086 CGAGAAAAACCCGAAAAAGAAAGGGTATGTTCAGTTTCAGACAACACATGGCGATTTGAA 1145
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 CGAGAAAAACCCAAAAAAGAAAGGGTATGTTCAGTTTCAGACAACACATGGTGATTTGAA 1080
Query 1146 CATTGAGCTCCATTGCGATATAGCTCCTAGAGCATGTGAGAATTTCATCACTCTCTGTGA 1205
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1081 CATAGAGCTCCATTGCGATATAGCTCCTAGAGCATGTGAGAATTTCATCACTCTTTGCGA 1140
Query 1206 ACGTGGTTACTACAATGGAGTGGCCTTTCACAGAAGTATCAGGAACTTCATGATTCAAGG 1265
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1141 ACGTGGTTACTACAATGGAGTGCCCTTTCACAGAAGCATCAGGAACTTCATGATTCAAGG 1200
Query 1266 GGGCGATCCAACTGGCACAGGAAAAGGAGGTGAATCCATTTGGGGGAAGCCATTCAAAGA 1325
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1201 TGGCGATCCAACTGGGACAGGAAAAGGAGGTGAATCCATCTGGGGGAAGCCATTCAAAGA 1260
Query 1326 CGAGCCAAACTCGAAGCTGCTTCACTCAGGAAGAGGCGTAGTTAGTATGGCTAATAGTGG 1385
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1261 CGAGCCGAACTCGAAGCTACTTCACTCGGGAAGAGGCGTAGTTAGTATGGCTAATAGTGG 1320
Query 1386 ACCTCACACAAATGGTTCTCAGTTTTTCGTCTTATACAAATCAGCGACCCATTTAAACTA 1445
||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 1321 TCCTCACACAAATGGTTCTCAGTTTTTCATCTTATACAAATCTGCAACCCATTTAAACTA 1380
Query 1446 CAAGCACACAGTGTTTGGTGGAGTTGTTGGTGGTTTGGCAACACTAGCAGCAATGGAGAA 1505
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 CAAGCACACAGTGTTTGGTGGAGTTGTTGGAGGTTTGGCAACACTAGCAGCAATGGAGAA 1440
Query 1506 TGTACCTGTAGATGAAAGCGACCGTCCTCTTGAAGAGATTAAGATAATCGAGGCAAGTGT 1565
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1441 TGTACCTGTAGATGAAAGCGACCGTCCTCTGGAAGAGATTAAGATAATCGAGGCAAATGT 1500
Query 1566 GTTTGTGAATCCATACACGGAGCTTGAtgaagaggaagagaaagagaaagctgagaaaga 1625
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1501 GTTTGTGAATCCATACACGGAGCCTGATGAAGAGGAAGAAAAAGAGAAAGCTGAGAAAGA 1560
Query 1626 gaagaatgaagacaaagacattgagaagaTCGGGTCGTGGTACAGCAACCCGGGATCAGG 1685
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1561 GAGGAATGAAGACAAAGACATTGAGAAGGTCGGGTCGTGGTACAGCAACCCGGGATCAGG 1620
Query 1686 AACAACAGAAGCTGGAGCGGGTGGCGGTGGTGTCGGAAAATACTTGAAAGCTATGAGTAG 1745
|||| | |||| |||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1621 AACAGCTGAAGGTGGAGCCGGTGGCGGTGGTGTCGGAAAATACTTGAAAGCCAAGAGTAG 1680
Query 1746 TACAGCCACTAAAGACACTAAAGGTTCCCTAGACTCAGATATTTCAACCATTGGAGTGT- 1804
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1681 TACAGCCACTAAAGACACTAATGGTTCCCTAGACTCTGATATTTCAACCATTGGAGT-TA 1739
Query 1805 CTAAGAAAAGAAAAACTACTGCGTCAGCCTCCACAGGGTTTAAAGATTTCTCTAGCTGGT 1864
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1740 CTAAGAAAAGAAAAACTACTGCGTCAGCCTCCACAGGGTTTAAAGATTTCTCGAGCTGGT 1799
Query 1865 AATTGAAAACATTCTCTACCTACTTTGTAAAACCGTTGACTAGTTTTGATAGAGACCAAG 1924
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1800 AATTGAAAACATTCTCTACCTACTTTGTAAAACTGTTGACTAGTTTTGATAGAGCCCAAG 1859
Query 1925 TCACAAAAGCATTTGTATGACAACACTGAGCCTTTGATGTCCAAAATCTGGAGCTGTGTA 1984
||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||
Sbjct 1860 TCACAAAAGCATTTGTATGCCAACATTGAACCTTTGATGTCCAAAAGCTGGAGCTGTGTA 1919
Query 1985 ATAAAG 1990
||||||
Sbjct 1920 ATAAAG 1925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5