BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67540.2
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332819 jgi|Araly1|332819|fgenesh1_pm.C_scaffold_8002162 2257 0.0
> Ahg332819 jgi|Araly1|332819|fgenesh1_pm.C_scaffold_8002162
Length=1419
Score = 2257 bits (1222), Expect = 0.0
Identities = 1358/1423 (95%), Gaps = 11/1423 (1%)
Strand=Plus/Plus
Query 376 ATGAAGAAGAACAACAAATACAATAAGAAATCAACATCTTTGCATTGCAATGATGCAGGA 435
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAACAACAACAAATACAATAAGAAATCAACATCTTTGCATTGCAATGATGCAGGA 60
Query 436 GGTTGCAGATATTCATTGCTTACTATTGTTTGGACCGTCGTCGGGTTTTTCCTGGTGGCT 495
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGTTGCAGATATTCATTCCTTACTATTGTTTGGACCGTCGTCGGTTTTTTCCTGGTGGCT 120
Query 496 CATCTTATCTCTCTGTATAGCAGAAAAGATAACAACATCCATCAACAAGTTTCTTCAGAT 555
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 121 CATCTTATCTCTCTGTATAGCAGAAAAGAT---AACATTCATCAACAAGTTTCTTCTGAT 177
Query 556 CAGTTACAAGTAGTACATCAT---C-T-TGC-TCATCCTATTGTTCGTGAACTTATAAGA 609
||||||||| ||||||||||| | | | | ||||||| |||||||||||||| |||||
Sbjct 178 CAGTTACAATTAGTACATCATCAGCATCTTCATCATCCTGTTGTTCGTGAACTTGTAAGA 237
Query 610 GTTGAAGAAGAGGTCCTGAGAATGCCGCCACCTAGGAAGCGTTCTCCTCGTACTAGTAAA 669
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GTTGAAGAAGAGATCCTGAGAATGCCCCCACCTAGGAAGCGTTCTCCTCGTACTAGTAAA 297
Query 670 CGGAGATCAAGAAAACCGATCCCTCTCGTTGAGGAGTTTCTTGACGACAAGTCACCAATT 729
|||||||| ||||||||||||||| | ||||| |||||||||||||| |||||||| ||
Sbjct 298 CGGAGATCGAGAAAACCGATCCCTATGGTTGAAGAGTTTCTTGACGAGAAGTCACCTATA 357
Query 730 CGACATCTTTTCTTTCCCGGTATCAAAACCGCCGCTTTTGGTCCCACCAAGGATATGGGA 789
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGGCATCTTTTCTTTCCCGGTATCAAAACCGCCGCTTTTGGTCCCACCAAGGATATGGGA 417
Query 790 AACGAGACATCGTATTACTTCCCCGGGAAAATTTGGATGGACACACAAGGGAATCCAATT 849
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 418 AACGAGACCTCGTATTACTTCCCTGGGAAAATTTGGATGGACACTGAAGGGAATCCAATT 477
Query 850 CAAGCACATGGCGGAGGGATTCTGCTTGACGTGAAATCTAACACTTACTATTGGTATGGA 909
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 478 CAAGCACATGGCGGAGGGATTCTGCTTGACGAGAAATCTAACACGTACTATTGGTATGGA 537
Query 910 GAGTATAAAGATGGACCAACTTACCATGCTCACAAGAAAGGACCAGCTAGAGTTGATATT 969
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAATATAAAGATGGACCGACTTACCATGCTCACAAGAAAGGACCAGCTAGAGTTGATATA 597
Query 970 ATTGGTGTTGGTTGTTACTCTTCAAAGGACTTATGGACATGGAAAAATGAAGGCATTGTA 1029
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAGGGGTTGGTTGTTACTCTTCAAAGGACTTATGGACATGGAAAAATGAAGGCATTGTA 657
Query 1030 CTCGGAGCTGAGGAAACAAACAAGACCCATGATTTGCATAAATCCAATGTTCTTGAACGA 1089
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 CTCGGAGCTGAAGAAACAAACAAGACCCATGATTTGCATAAATCCAATGTTCTTGAGCGA 717
Query 1090 CCCAAAGTGATCTACAATGAAAAGACAGAAAAGTATGTGATGTGGATGCATATCGACGAT 1149
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 CCCAAAGTGATCTACAATGAAAAGACAGAGAAGTATGTGATGTGGATGCATATCGACGAT 777
Query 1150 GCAAACTACACTAAAGCTTCAGTTGGTGTGGCCATTAGCAATAGCCCGACAGGTCCTTTC 1209
||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct 778 GCAAACTACACTAAAGCTTCAGTTGGTGTAGCCATTAGCGATAACCCGACAGGTCCTTTC 837
Query 1210 GAGTATCTATACAGTAAACGTCCACACGGGTTCGATAGTCGGGACATGACTGTCTTCAAA 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAGTATCTATACAGTAAACGTCCACACGGGTTCGATAGTCGGGACATGACTGTCTTCAAA 897
Query 1270 GACGACGATGGTGTTGCTTACCTGATATATTCGTCTGAAGTCAATAGTGTGCTTCATATT 1329
|| |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 898 GATGACGATGGTGATGCTTACCTGATATATTCGTCTGAAGTCAACAGCGTGCTTCATATT 957
Query 1330 GGACCCTTGACGGAAGATTACCTCGATGTGACACCGGTTATGAAGAGAGTAATGGTGGGA 1389
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGACCCTTAACGGAAGATTACCTCGATGTGACACCGGTTATGAAGAGAGTAATGGTGGGA 1017
Query 1390 CAACACAGGGAAGCTCCAGCTATCTTCAAGCATCAGAATATTTATTACATGGTCACTTCC 1449
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1018 CAACACAGGGAAGCTCCAGCTATCTTCAAGTATCAGAATATTTATTACATGGTCACTTCC 1077
Query 1450 TGGTGCACTGGTTGGGCACCAAATGAAGCCTTGGCTCATGCGGCTGAATCTATAATGGGT 1509
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1078 TGGTGCACTGGTTGGGCACCAAATGAAGCCTTGGCTCATGCGGCAGAATCTATAATGGGA 1137
Query 1510 CCATGGGAGAAATTGGGGAACCCGTGTATCGGTGGTAACAAAGTTTTCCGGTTAACAACA 1569
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CCATGGGAGAAATTGGGGAATCCGTGTATCGGTGGTAACAAAGTTTTCCGGTTAACAACA 1197
Query 1570 TTCTTTGCGCAGAGCACTTATGTGATTCCTTTACCTGGTGTTCCCGGTGCGTTTATATTC 1629
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1198 TTCTTTGCGCAGAGCACTTATGTGATTCCGTTACCGGGTGTTCCCGGTGCATTTATATTC 1257
Query 1630 ATGGCAGATAGGTGGAACCCGGCTGATTTGCGGGATTCCAGATACGTGTGGTTACCGTTA 1689
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 ATGGCAGATAGGTGGAACCCGGCTGATTTGCGGGATTCCAGATATGTGTGGTTACCGTTA 1317
Query 1690 GTTATAGGTGGACCTGCTGACCAGCCTTTGGAGTTCAACTTCGGGTTCCCA-TCGTGGTC 1748
|||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 1318 GTTATAGGTGGACCTGCTGATCAGCCTTTGGAGTTCAATTTCGGGTTCCCACT-GTGGTC 1376
Query 1749 CAGAGTGTCCATCTACTGGCACAGTAAATGGCGGCTGCCTTAA 1791
|||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1377 GAGAGTGTCTATCTACTGGCACAGCAAATGGCGGCTGCCTTAA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5