BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67550.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496841 jgi|Araly1|496841|fgenesh2_kg.8__2657__AT5G67550.1 2473 0.0
> Ahg496841 jgi|Araly1|496841|fgenesh2_kg.8__2657__AT5G67550.1
Length=1724
Score = 2473 bits (1339), Expect = 0.0
Identities = 1601/1726 (93%), Gaps = 24/1726 (1%)
Strand=Plus/Plus
Query 7 CAATAAACAAGGAACATGATTTTCGATCATCAACTTGTTCAACATGACAAAATCAAGAAT 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3 CAATAAACAAGGAACATGATTTTCGATCATCAACTTCTTCAACATGACAAAATCAAGAAT 62
Query 67 AACCGGAGCTCTGTCTCAGCTTCTTTTAACGGCTGTGATCTCTCCGATTTTGGCGGTTTC 126
|||||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 63 AACCGGAGTTCTGTCTCAGCTCCTTTTAACGGCTGTGATCTCTCCAATGTTGGCGGTTTC 122
Query 127 AAGTTTATCAGACGGTGGAGATCATGAGA-G-GT-TTAAGAGACGCGATCCTCTCAACAG 183
|||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 123 AAGTTTATCATACGGTGGAGATCATGAGATGTTTATTAAGAGACGCGATCCTCTCAACAG 182
Query 184 CTTTAGATATTACGACGGAGGTTTCAATGTTCGAAACAAACATTATTGGGCAGCTACTGC 243
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 183 CTTTAGATATTACGACGAAGGTTTTGATGTTCGAAACAAACATTATTGGGCAGCTACTGC 242
Query 244 ATTTACGGGAATCCACGGTTACGCCGTCGCCGGAGTGTTGATTATTGTCGGTATATGTTT 303
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 243 ATTTACGGGAATCCACGGTTACGCAGTCGCCGGAGTGTTGATTATTGTCGGCGTATGTGT 302
Query 304 GGGACTTTACGTAGCATTCTCCGACAAAAGAAGACGTGTTTCTTCCAC-TCGCCGACGAT 362
|||||| |||||||| |||||| | ||||| ||||| ||||||||||| | |||| || |
Sbjct 303 GGGACTGTACGTAGCTTTCTCCAAGAAAAGGAGACGCGTTTCTTCCACGT-GCCGCCGTT 361
Query 363 ATCTCGACCGTTATTATCTTCCTCTGTTCTTACTTCTCCTCCTTTTCATGTTTCTCTCTG 422
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 362 ATCTCAACCGTTATTATCTTCCTCTGTTCTTACTTCTCCTCCTCTTCATGTTTCTCTCCA 421
Query 423 TGGTAACGACAGGGATAGTGATAGCAGCGAACCAGAGGTCGAAGAACAGAACAGAGGAGA 482
||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 422 TGGCAACGACAGGGATAGTGATATCAGCGAACGAGAGGTCGAAGAACAGAACAGAGGAAA 481
Query 483 TGAAAGAAACGATAGACAAAGCAGGAGAAGATGTTAATCAAAACATTCGTACAGTGATAG 542
|||||||||| |||||||||||||||||||||||| |||| ||||| || || |||||||
Sbjct 482 TGAAAGAAACCATAGACAAAGCAGGAGAAGATGTTGATCATAACATCCGCACGGTGATAG 541
Query 543 TGTCGTTAACGAAGATACAGTACTTGTTGCTTCCATACGATCAGAACACGACTCATCTTC 602
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 542 TGTCGTTAACGAAGATACAGTACTTGTTGCTTCCATACGATCAGAATACGACTCATCTTC 601
Query 603 TCAACGTCACCACTCATCGACTCGGCAAAGGTTCTCGCCTTATCCAAAGCTTCCTTCATC 662
|||||||||| || |||||||| || ||||| ||||||||||| ||| |||||||||||
Sbjct 602 TCAACGTCACTACCCATCGACTAGGAAAAGGATCTCGCCTTATTCAATCCTTCCTTCATC 661
Query 663 ATAAGGGTCGTTCCATTGATCTCGCCATCAAAATCTCGTATGTATCTCATCTTATGATTA 722
| || ||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 662 ACAACGGTCGTTCCATTGATCTAGCTATCAAAATCTCGTATGTCTCTCATCTTATGATTG 721
Query 723 CATCGACCAACTTGTTCCTTCTGCTTCTAGCCTTTTTACCTCTATTGCTTCACTGGCACC 782
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 722 CATCGACCAACTTGTTCCTTCTGCTTCTAGCCTTTGTACCTCTATTGCTTCACTGGCACC 781
Query 783 CTGGATTCATCATGGTGATATTCTTGTGTTGGATCATAACAACTCTTTGTTGGGTTCTAA 842
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 782 CTGGATTCATCATGGTGATATTCTTGTGTTGGATCATAGCAACTCTTTGTTGGGTTCTAA 841
Query 843 CTGGATTCGATTTCTTTATACACACCTTCGCAGAAGACCTTTGTTCAGCTTTCAATGGTT 902
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 842 CTGGATTCGATTTCTTTATTCACACCTTCGCAGAAGACCTTTGTTCAGCTTTCAAAGGTT 901
Query 903 TCGTACAAAACCCACGAAATAGCACACTGACTAATCTTTTCCCTTGTATGGATCCTCTTC 962
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TCGTACAAAACCCACAAAACAGCACACTGACTAATCTTTTCCCTTGTATGGATCCTCTTC 961
Query 963 ATTCTGATAAAACCCTAATCGAGATAAGCCTGATGATTCATAACTTTATTACCCAGTTAA 1022
||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||
Sbjct 962 ATTCTGATAAAACCCTAATCGAGATAAGCTTGATGATTCATAACTTCATCACCGAGTTAA 1021
Query 1023 ACTCAAAAGTAGCAGAGTCAATGCGTTCTAATGCGTTGACTGATCGGAGCAATACTGTCT 1082
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1022 ACTCAAAAGTAGCAGAGTCAATGCGTTCTAATGCGTTGGCTGATCGGAGCAATACTGTCT 1081
Query 1083 CGTGGGCGCCTGAATCTGGAATCATATGCGATCCGTTTGTCGGACAACAGATTAACAGCT 1142
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 1082 CGTGGGCGCCTGAATCTGGAATCATATGCGATCCGTTTGGCGGACAACAAATTAACAGTT 1141
Query 1143 ACACACCACAAAGCTGCTCCAATGGCGCCATTCCAATCGGCGAATTCCCAAATATCCTTT 1202
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1142 ACAAACCACAAAGCTGCTCCAATGGCGCCATTCCAATCGGCGAATTCCCAAATATTCTTT 1201
Query 1203 CGAGATTCACATGCCACGACAAAGATCCACCGGAAACTTGCAGAATCACCGGAAAATTCA 1262
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1202 CGAGATTCACATGCCACGACAAAGATCCCCCGGAAACTTGCAGAATCACCGGAAAATTCA 1261
Query 1263 TCCCGGAAGCAGCTTACCTAAAGGTCTATGCTTACAGCAACTCAGCACAAGGCATGCTAG 1322
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1262 TCCCGGAAGCAGCTTACCTAAAGGTATATGCTTACAGCAACTCAGCACAAGGCATGCTCG 1321
Query 1323 ACATTTTGCCTTCTTTTCAAAACCTAACAGAATGCCTTGCCGTGAAAGACACGTTATCGA 1382
|||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1322 ACATCTTACCTTCTCTTCAAAACCTAACAGAATGCCTAGCCGTGAAAGACACGTTATCGA 1381
Query 1383 GCATCGTCTCTAACCAATGTGATCCCTTTAGGGCTTCGATGTATCGCCTTTGGGCATCGA 1442
|||| ||||||||||||||||| ||||||| || ||||||||| ||||||||||||| |
Sbjct 1382 GCATAGTCTCTAACCAATGTGAACCCTTTAAAGCATCGATGTATTGCCTTTGGGCATCAA 1441
Query 1443 TCCTTGCTCTGTCTCTTATCATGGTGGTTCTAGTTTTGCTCTTCCTCGCTAAAGCTTTCC 1502
| ||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 1442 TTCTTGCTCTGTCACTTATCATGGTGGTTCTAGTTTTGCTCCTCTTCGCCAAAGCTTTCC 1501
Query 1503 AGGAGAAAGGAAAGAGTTTTGCTTGGTTTTCTATTCATCCAACTTCTTCTGCAGAAATAC 1562
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1502 AGGAAAAAGGAAAGAGTTTTGCTTGGTTTTCGATTCATCCAACTTCTTCCGCAGAAATAC 1561
Query 1563 GACAAGTGAATATATAGTGGTTAGTAAG--TGtatatatatactatactgt-tt-t--tt 1616
||||||||||||||||||||||||| | | |||||||||| ||||| | || | ||
Sbjct 1562 GACAAGTGAATATATAGTGGTTAGTGTGCATATATATATATA-TATACACTATTATACTT 1620
Query 1617 aatagttatt--ta-c-acatttataaaaaatat-atCATTGAAAGATG----GAGAGTG 1667
|| || || || | |||||| ||||||| || ||||||||||||| |||||||
Sbjct 1621 GATTTTTTTTGGTATCTACATTTTTAAAAAA-ATTATCATTGAAAGATATATAGAGAGTG 1679
Query 1668 -ATTAAGAAATGTAAATATGACATTGTATCAAACATTTGTAATAAG 1712
|| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1680 TAT-AAGAAGTGTAAATATGACATTGTATCAAACATTTGTAATAAG 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5