BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67560.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496840 jgi|Araly1|496840|fgenesh2_kg.8__2656__AT5G67560.1 1483 0.0
Ahg485347 jgi|Araly1|485347|fgenesh2_kg.5__1339__AT3G49870.1 708 0.0
Ahg485346 jgi|Araly1|485346|fgenesh2_kg.5__1338__AT3G49860.1 440 1e-122
> Ahg496840 jgi|Araly1|496840|fgenesh2_kg.8__2656__AT5G67560.1
Length=996
Score = 1483 bits (803), Expect = 0.0
Identities = 944/1009 (94%), Gaps = 21/1009 (2%)
Strand=Plus/Plus
Query 123 ATATCAGCAGCGGAACAAGGATTGAGAAAAGGAACCTTTCCCTTTTAATAAGCCGA-TAT 181
||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| | ||
Sbjct 1 ATATCAGCAGCGGAAGAAGGATTGAAAAAAGGAAGCTTTCCCTTTTTTTAAGCCCATTAG 60
Query 182 AGATCCTTGGAGGAGAATTTGTAGCAGACCGATCTCTGTCTGTTGTCTCTGTTTCTACGA 241
|||||| ||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 61 AGATCCGTGGAGGAGAATTTCTAGCAGACCGA------TC---TGTCTCTGTTTCTACGA 111
Query 242 ATCTCTGTGTTTGTCGGAAATCGTAAATTATGGGTTTGTGGGATGCTCTTCTCAATTGGC 301
|||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 112 ATCTCTCTGTTTGTCTGAAATCATAAATCATGGGTTTGTGGGATGCTCTTCTCAATTGGC 171
Query 302 TTCGCAGCCTCTTCTTCAAGCAAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTCGCAGCCTCTTCTTCAAGCAAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAG 231
Query 362 GAAAGACATCACTTGTTAACGTTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAAAGACATCACTTGTTAACGTTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTA 291
Query 422 CGGTTGGTTTCAACATGAGGAAAGTGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATC 481
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 292 CGGTCGGATTCAACATGAGGAAAGTGACAAAAGGAAGTGTCACAATCAAGCTTTGGGATC 351
Query 482 TCGGTGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGA 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCGGGGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGA 411
Query 542 TTGTGTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAGAGTGAACTCC 601
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 412 TTGTGTATGTAGTTGATGCTGCTGATCCTGACAACCTCAGTGTCTCGAAGAGCGAACTCC 471
Query 602 ATGATTTGTTGAGCAAGACGTCGCTTAATGGTATCCCTCTCCTAGTCCTTGGGAACAAAA 661
|||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||
Sbjct 472 ATGATTTGTTGAGCAAGACGTCCCTTAGTGGTATCCCTCTTCTAGTCCTTGGCAACAAAA 531
Query 662 TCGACAAGCCTGGAGCTTTGTCCAAAGAAGCCCTAACCGATGAAATGGGTCTCAAGTCAC 721
||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 532 TCGACAAGCCTGGAGCTTTGTCCAAAGAAGCTCTAACTGAGGAAATGGGACTCAAGTCAC 591
Query 722 TGACAGATAGAGAAGTCTGTTGCTTCATGATATCTTGCAAGAACTCTACCAACATCGATC 781
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 592 TTACAGATAGAGAAGTCTGTTGCTTCATGATATCTTGCAAGAACTCCACTAACATCGATC 651
Query 782 AAGTCATTGATTGGCTTGTAAAGCACTCCAAATCATCGAATTAAACTTTACCCCAAAAGG 841
||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |
Sbjct 652 AAGTCATTGATTGGCTTGTAAAGCACTCCAAATCATCGAGCTAAACTTTGCACCAAACGA 711
Query 842 AGAGAAGTCAACTCTCTGCAGTTGTC-GATCTTTCTTGTGTTTTTGGTCATTTGATGATG 900
| ||||||||||||||||||||| || | |||| ||||||||||||||| ||||||||||
Sbjct 712 ACAGAAGTCAACTCTCTGCAGTTCTCAG-TCTT-CTTGTGTTTTTGGTCCTTTGATGATG 769
Query 901 ATGATGGTGATTGTG--G----AAGAAGACACAGCTTTTTTCTTTTATCCTGTGAAAAAC 954
||||||||||||||| | |||||||||||||||| | |||||||||||||||||||
Sbjct 770 ATGATGGTGATTGTGATGGTGGAAGAAGACACAGCTTTCT-CTTTTATCCTGTGAAAAAC 828
Query 955 AAGATTTGTCTATGTTCTCTGTCTGATTCTTTATCTGTCTTTCTTCTGCGTATGTGGCTG 1014
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 829 AAGATTTGTCTATGTTTTCTATCTGATTCTTTATC-GTCTTTCTTCTGCGTATGTTGCTG 887
Query 1015 TGTTCTCTGTATATTAGATTTGATTGGTGTTCCCTCTTCTTAAAGCCATGATGAGATCAC 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGTTCTCTGTATATTAGATTTGATTGGTGTTCCCTCTTCTTAAAGCCATGATGAGATCAC 947
Query 1075 TTCCTTCGGGGTCAGCTTTTTCAATTTTACGAGTTCATTGCATGTTTTG 1123
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 948 TTCCTTCGGGGTCAGCTTTTTCAATTTTACCAGTTCATTGCATGTTTTG 996
> Ahg485347 jgi|Araly1|485347|fgenesh2_kg.5__1339__AT3G49870.1
Length=855
Score = 708 bits (383), Expect = 0.0
Identities = 505/565 (89%), Gaps = 4/565 (1%)
Strand=Plus/Plus
Query 271 ATGGGTTTGTGGGATGCTCTTCTCAATTGGCTTCGCAGCCTCTTCTTCAAGCAAGAAATG 330
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 42 ATGGGTTTGTGGGAAGCTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCAAGCAAGAAATG 101
Query 331 GAGCTTTCATTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTTAACGTTGTTGCA 390
||||| || ||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 102 GAGCTATCTTTGATAGGACTCCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCA 161
Query 391 ACCGGTGGATACAGTGAAGACATGAT-CCCTACGGTTGG-TTTCAACATGAGGAAAGTGA 448
|| ||||||||||||||||||||||| ||| ||||| || ||| |||||||||||||| |
Sbjct 162 ACTGGTGGATACAGTGAAGACATGATTCCC-ACGGTCGGGTTT-AACATGAGGAAAGTAA 219
Query 449 CAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTCCGCAGCA 508
||||||||| ||| || ||||| || |||||||| ||||||||||| || ||||||||||
Sbjct 220 CAAAAGGAAATGTTACAATCAAACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCA 279
Query 509 TGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTGTATGTAGTTGATGCTGCTGATC 568
|||||||||||||||| || ||||||| || ||||||||||||||||||||||| ||||
Sbjct 280 TGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATC 339
Query 569 CTGATAACCTCAGTGTCTCGAAGAGTGAACTCCATGATTTGTTGAGCAAGACGTCGCTTA 628
|||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 340 CTGACAACCTCAGTGTCTCGAAAAGTGAACTCCATGATCTGTTGAGCAAGACTTCGCTTA 399
Query 629 ATGGTATCCCTCTCCTAGTCCTTGGGAACAAAATCGACAAGCCTGGAGCTTTGTCCAAAG 688
||||||||||||| || || ||||||||||| || ||||| ||||||||| |||||||||
Sbjct 400 ATGGTATCCCTCTTCTGGTTCTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAG 459
Query 689 AAGCCCTAACCGATGAAATGGGTCTCAAGTCACTGACAGATAGAGAAGTCTGTTGCTTCA 748
||||| |||| || |||||||| || | ||| || |||||||||||||||||||| ||||
Sbjct 460 AAGCCTTAACAGACGAAATGGGGCTTACGTCTCTTACAGATAGAGAAGTCTGTTGTTTCA 519
Query 749 TGATATCTTGCAAGAACTCTACCAACATCGATCAAGTCATTGATTGGCTTGTAAAGCACT 808
||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||| |
Sbjct 520 TGATATCCTGCAAAAACTCTACAAACATTGATCAAGTCATTGATTGGCTCGTAAAGCATT 579
Query 809 CCAAATCATCGAATTAAACTTTACC 833
| |||||| ||| ||||||| |||
Sbjct 580 CAAAATCAAAGAACTAAACTTCACC 604
> Ahg485346 jgi|Araly1|485346|fgenesh2_kg.5__1338__AT3G49860.1
Length=604
Score = 440 bits (238), Expect = 1e-122
Identities = 434/526 (83%), Gaps = 24/526 (5%)
Strand=Plus/Plus
Query 323 AAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTTAACG 382
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 2 AAGAAATGGAGATTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAATG 61
Query 383 TTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTACGGT-TGGTTTCAACATGAGG 441
|||||||||| | || |||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 62 TTGTTGCAACTGATGAATACAGTGAAGACATGATTCCTACGGTCGGGTTT-AACATGAGG 120
Query 442 AAAGTGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTC 501
||||||||||||| || ||| | |||| ||| |||||||| ||||||||||| || |||
Sbjct 121 AAAGTGACAAAAGAAAATGTTGCAATCAGGCTATGGGATCTTGGTGGTCAACCAAGATTC 180
Query 502 CGCAGCATGTGGG-A-A-CGTT--ACTGC-CG-TTC--TGTT-TCCGCGATTG-T-GTAT 549
||| |||||||| | | | || ||| | | ||| |||| | | |||| | | |
Sbjct 181 CGCTTCATGTGGGTACATC-TTAGACT-CAGGTTTCTTTGTTAT-CTTTATTGCTCGGCT 237
Query 550 GTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAG-AGTGAACTCCATGATTT 608
|| || | | | |||||||| ||| | ||||||||| || |||||||||||||||||
Sbjct 238 -TA-TTCACAAT-CAGATCCTGACAACTTAAGTGTCTCG-AGAAGTGAACTCCATGATTT 293
Query 609 GTTGAGCAAGACGTCGCTTAATGGTATCCCTCTCCTAGTCCTTGGGAACAAAATCGACAA 668
|||||||||||| |||||||| ||||||||||| | || ||||||||||| || |||||
Sbjct 294 GTTGAGCAAGACTTCGCTTAACGGTATCCCTCTTATGGTTCTTGGGAACAAGATTGACAA 353
Query 669 GCCTGGAGCTTTGTCCAAAGAAGCCCTAACCGATGAAATGGGTCTCAAGT-CACTGACAG 727
||||||||| |||||||||||||| | || || |||||||| || | || | || ||||
Sbjct 354 ACCTGGAGCTCTGTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTA-GTTCGCTTACAG 412
Query 728 ATAGAGAAGTCTGTTGCTTCATGATATCTTGCAAGAACTCTACCAACATCGATCAAGTCA 787
||||||||||||| || ||||||||||| ||||||||| |||||| ||| ||||| ||||
Sbjct 413 ATAGAGAAGTCTGCTGTTTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGGTCA 472
Query 788 TTGATTGGCTTGTAAAGCACTCCAAATCATCGAATTAAACTTTACC 833
|||||||| | ||||| ||||| |||||| ||| ||||||| |||
Sbjct 473 TTGATTGGGTCGTAAACCACTCAAAATCAAAGAACTAAACTTCACC 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5