BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67580.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332814 jgi|Araly1|332814|fgenesh1_pm.C_scaffold_8002157 1310 0.0
Ahg474123 jgi|Araly1|474123|fgenesh2_kg.1__4077__AT1G49950.2 119 9e-26
> Ahg332814 jgi|Araly1|332814|fgenesh1_pm.C_scaffold_8002157
Length=879
Score = 1310 bits (709), Expect = 0.0
Identities = 841/901 (93%), Gaps = 23/901 (3%)
Strand=Plus/Plus
Query 255 ATGGGTGCACCAAAGCAGAAGTGGACACCGGAAGAAGAAGCAGCTCTTAAAGCTGGAGTT 314
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGCCCCAAAGCAGAAGTGGACACCGGAAGAAGAAGCAGCTCTTAAAGCTGGAGTT 60
Query 315 CTTAAGCATGGGACTGGGAAGTGGCGTACCATACTCTCGGATACTGAGTTTAGTTTAATC 374
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTAAGCATGGCACTGGGAAGTGGCGTACCATACTCTCCGATACTGAGTTTAGTTTAATC 120
Query 375 CTTAAGTCTCGCTCTAATGTTGATCTTAAGGACAAATGGAGAAATATAAGCGTGACAGCT 434
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 CTTAAGTCTCGCTCAAATGTTGATCTTAAGGACAAGTGGAGAAACATAAGCGTGACAGCT 180
Query 435 TTATGGGGTTCAAGGAAGAAGGCTAAACTTGCGCTTAAGAGGACTCCACCAGG-TACTAA 493
|||||||||||||||||||||||||||||||||||||| | |||||| || || ||||||
Sbjct 181 TTATGGGGTTCAAGGAAGAAGGCTAAACTTGCGCTTAAAATGACTCCGCC-GGCTACTAA 239
Query 494 ACAGGATGATAACAACACAGCTCTTACCATTGTGGCTTTGACTAATGATGATGAACGTGC 553
|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||
Sbjct 240 ACAGGATGATAACAACACAGCTCTTAGCATTGTGGCTTTGGCTAATGACGATGAACGGGC 299
Query 554 AAAACCAACTTCCCCCGGAGGTTCTGGTGGTGGATCACCACGCACTTGTGCTTCTAAGAG 613
||||||||||| ||| |||| ||| | |||||||||| |||||
Sbjct 300 AAAACCAACTT--CCC-------CTGGAGGT---T---------CTTGTGCTTCAAAGAG 338
Query 614 ATCAATTACAAGTTTGGATAAGATCATCTTTGAGGCAATTACCAACTTGAGGGAACTACG 673
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 339 ATCAATTACAAGTTTGGATAAGATCATCTTGGAGGCAATTACTAACTTGAAGGAACTACG 398
Query 674 CGGTTCTGACAGAACATCAATCTTTCTGTATATAGAGGAGAATTTCAAGACTCCACCGAA 733
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CGGTTCTGACAGAACATCGATCTTTCTGTATATAGAGGAGAATTTCAAGACTCCACCGAA 458
Query 734 TATGAAAAGGCATGTCGCAGTACGATTAAAGCATTTATCATCGAATGGAACATTAGTTAA 793
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TATGAAAAGACATGTCGCAGTACGATTAAAGCATTTATCATCGAATGGAACATTAGTTAA 518
Query 794 GATAAAGCACAAGTACAGGTTTTCTTCTAATTTTATTCCCGCAGGTGCAAGACAGAAGGC 853
|||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| | |
Sbjct 519 GATAAAGCACAAGTACAGGTTTTCTTCTAATTTTATCCCCGTAGGAGCAAGACAGATGTC 578
Query 854 TCCTCAACTCTTTCTGGAAGGAAACAACAAGAAAGACCCAACAAAACCCGAGGAGAACGG 913
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 579 TCCTCAACTCTTTTTGGAAGGAAACAACAAGAAAGACCCACCAAAACCCGAGGAGAACGG 638
Query 914 TGCCAACAGTCTCACTAAATTCCGAGTAGACGGTGAATTATATATGATAAAAGGCATGAC 973
||||| || |||||||| | ||||||||||||||| |||| ||||||||||||||||||
Sbjct 639 CGCCAAAAGCCTCACTAAGTCCCGAGTAGACGGTGAGTTATTTATGATAAAAGGCATGAC 698
Query 974 AGCTCAAGAAGCTGCAGAGGCTGCAGCAAGAGCAGTTGCAGAGGCAGAATTTGCTATCAC 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AGCTCAAGAAGCTGCAGAGGCTGCAGCAAGAGCAGTTGCAGAGGCAGAATTTGCTATCAC 758
Query 1034 AGAGGCTGAACAAGCAGCAAAAGAGGCAGAAAGAGCAGAAGCAGAAGCTGAAGCTGCTCA 1093
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 759 AGAGGCTGAAGAAGCAGCAAAAGAGGCAGCAAGAGCAGAAGCAGAAGCTGAAGCTGCTCA 818
Query 1094 GATATTTGCAAAGGCAGCCATGAAAGCTTTGAAGTTCAGGATCCGTAATCATCCTTGGTG 1153
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 819 GATATTTGCAAAGGCAGCCATGAAAGCTTTGAAGTTCAAGATCCGTAATCATCCTTGGTG 878
Query 1154 A 1154
|
Sbjct 879 A 879
> Ahg474123 jgi|Araly1|474123|fgenesh2_kg.1__4077__AT1G49950.2
Length=1349
Score = 119 bits (64), Expect = 9e-26
Identities = 136/170 (80%), Gaps = 8/170 (5%)
Strand=Plus/Plus
Query 253 GGATGGGTGCACCAAAGCAGAAGTGGACACCGGAAGAAGAAGCAGCTCTTAAAG-CTGGA 311
|||||||||| ||||||||||| ||||| | ||||||||| ||||| |||||| ||||
Sbjct 148 GGATGGGTGCTCCAAAGCAGAAATGGACTCAAGAAGAAGAATCAGCT-TTAAAGTCTGGC 206
Query 312 GTTCTTAAGCATGGGA-CTGGGAAGTGGCGTACCATACTCTCGGATACTGAGTTTAGTTT 370
||| | |||||| ||| |||| || ||||| || || ||| ||| |||| |||||
Sbjct 207 GTTATAAAGCAT-GGACCTGGTAAATGGCGCACAATTCTCAAAGATCCTGAATTTAGCGG 265
Query 371 AATCCTTA-AGTCT-CGCTCTAATGTTGATCTTAAGGACAAATGGAGAAA 418
| | |||| | || || || |||||||||||||||||||||||||||||
Sbjct 266 AGT-CTTATA-CCTGCGTTCCAATGTTGATCTTAAGGACAAATGGAGAAA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5