BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67590.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358798 jgi|Araly1|358798|fgenesh1_pg.C_scaffold_8002585 760 0.0
Ahg951424 jgi|Araly1|951424|scaffold_803311.1 276 2e-73
> Ahg358798 jgi|Araly1|358798|fgenesh1_pg.C_scaffold_8002585
Length=465
Score = 760 bits (411), Expect = 0.0
Identities = 447/465 (96%), Gaps = 0/465 (0%)
Strand=Plus/Plus
Query 73 ATGGCGCTTTGTGCTACTACTCAAAGGACTATCCGTATAGCGGCGACGCTCCGGCGTGTT 132
||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 1 ATGGCGCTTCGTGCTACTACTCAAGGGACTAGCCGTATCGCGGCGACGCTCCGGCGTGTT 60
Query 133 GCTCGACCTTTCGCTACTGACGCGGTGGTTGAGTCGGATTACAAGCGTGGTGAGATCGGT 192
||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GCTCGGCCTTTCTCTACTGACGCGGTGGTTGAGTCGGATTACAAGCGTGGGGAGATCGGT 120
Query 193 AAGGTCTCCGGAATCCCAGAGGAGCATCTTTCTCGCAAGGTGATAATATACTCACCTGCT 252
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 121 AAGGTCTCCGGAATCCCTGAGGAGCATCTTTCCCGGAAGGTGATAATATACTCACCTGCT 180
Query 253 AGAACAGCTACCCAGTCAGGATCTGGAAAACTCGGAAAATGGAAGATTAACTTCGTCTCC 312
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AGAACAGCTACCCAGTCAGGATCTGGAAAACTTGGAAAATGGAAGATTAACTTCGTCTCC 240
Query 313 ACCTTAAAGTGGGAGAATCCGTTGATGGGATGGACTTCTACAGGTGACCCCTATGCTAAT 372
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct 241 ACCTTAAAGTGGGAGAATCCATTGATGGGCTGGACTTCCACAGGTGACCCCTATGCCAAT 300
Query 373 GTTGGTGACTCTGCTCTTGCTTTTGATTCTGAAGAAGCTGCTAAGTCTTTTGCTGAGCGT 432
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GTTGGTGACTCTGCTCTTGCTTTTGATTCAGAAGAAGCTGCTAAGTCTTTTGCTGAGCGT 360
Query 433 CATGGTTGGGATTATAAGGTCAAGAAGCCCAACACACCATTATTGAAGGTCAAGTCTTAC 492
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CATGGTTGGGATTATAAAGTCAAGAAGCCCAACACACCGTTATTGAAGGTCAAGTCTTAC 420
Query 493 TCGGACAACTTCAAGTGGAAAGGCAATCCTCAACCAGAAAACTGA 537
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGGACAACTTCAAGTGGAAAGGCAATCCTCAACCAGAAAACTGA 465
> Ahg951424 jgi|Araly1|951424|scaffold_803311.1
Length=1459
Score = 276 bits (149), Expect = 2e-73
Identities = 178/192 (93%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 161 TTGAGTCGGATTACAAGCGTGGTGAGATCGGTAAGGTCTCCGGAATCCCAGAGGAGCATC 220
|||| | ||| ||||||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct 1033 TTGAATTGGAATACAAGCGTGGCGAGATCGGCAATGTCTCCGGAATCCCTGAGGAGCATC 1092
Query 221 TTTCTCGCAAGGTGATAATATACTCACCTGCTAGAACAGCTACCCAGTC-AGGATCTGGA 279
|||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1093 TTTCCCGGAAGGTGATAATATACTCACCTGCTAGAACAGCTACCCAG-CAAGGATCTGGA 1151
Query 280 AAACTCGGAAAATGGAAGATTAACTTCGTCTCCACCTTAAAGTGGGAGAATCCGTTGATG 339
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AAACTTGGAAAATGGAAGATAAACTTCGTCTCCACCTTAAAGTGGGAGAATCCGTTGATG 1211
Query 340 GGATGGACTTCT 351
|| |||||||||
Sbjct 1212 GGGTGGACTTCT 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5