BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G67600.1

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496835 jgi|Araly1|496835|fgenesh2_kg.8__2651__AT5G67600.1         571    2e-162


> Ahg496835 jgi|Araly1|496835|fgenesh2_kg.8__2651__AT5G67600.1
Length=442

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 417/463 (90%), Gaps = 32/463 (7%)
 Strand=Plus/Plus

Query  1    ACCGGCATAGCTTCGTTATAAAGGAAAGGAACAGAGTTTGCTTTTAAACaaagagagaaa  60
            ||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||| |||
Sbjct  1    ACCGGCATAGCTTCGCTATAAAGGAAAGAAACAGAGTTTGC--TTAAACAAAGAGATAAA  58

Query  61   gaaaaaaaagctcaaagaactc---ag-a-a-g-aagaagaaagaTGTATCATCAAGAAC  113
            ||||||||| ||||||||||||   || | | | ||||||||||||||||||||||||||
Sbjct  59   GAAAAAAAAACTCAAAGAACTCAAAAGAAGAGGAAAGAAGAAAGATGTATCATCAAGAAC  118

Query  114  AACATCCTGTCGGTGCTCCTCCTCCCCAAGGGTATCCACCTAAGGACGGTTATCCTCCGG  173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  AACATCCTGTCGGTGCTCCTCCTCCCCAAGGGTATCCACCTAAGGACGGTTATCCTCCGG  178

Query  174  CCGGTTATCCTCCAGCCGGTTATCCACCGCCAGGATATGCTCAGGGATACCCTGCACAAG  233
            |||||||||||    || |       |||   ||||| ||||||||||||||||| ||||
Sbjct  179  CCGGTTATCCT----CC-G-------CCG---GGATACGCTCAGGGATACCCTGCTCAAG  223

Query  234  GTTATCCTCCGCCGCAGTACTCTCAAGCTCCGCAGCAGAAGCAAAACGCCGGTATGCTTG  293
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  GTTATCCTCCGCCGCAATACTCTCAAGCTCCGCAGCAGAAGCAAAACGCCGGTATGCTTG  283

Query  294  AAGGATGTTTGGCTGCGCTCTGTTGTTGCTGTCTCTTGGATGCATGTTTCTGATCGGAGG  353
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  284  AAGGATGTTTGGCTGCGCTCTGTTGTTGCTGTCTCTTGGATGCATGTTTCTGATGGGAGG  343

Query  354  ATAATTATA--TACGTTGCCTCAGTCAACT-TT-TATTTCCTCATATATGTTATGTAATG  409
            || || |||  |  |||||||||||||||  || ||||||   |||||||| ||||||||
Sbjct  344  ATGATGATACGTT-GTTGCCTCAGTCAACGATTCTATTTC---ATATATGTAATGTAATG  399

Query  410  TTCAACAATCTTTCTTCTGTTGTTATCTTCTTTCAATTCGAAT  452
            ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  400  TTCAACAATCTCTCTTCTGTTGTTATCTTCTTTCAATTCGAAT  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19344883623


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5