BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67600.1 Length=531 Score E Sequences producing significant alignments: (Bits) Value Ahg496835 jgi|Araly1|496835|fgenesh2_kg.8__2651__AT5G67600.1 571 2e-162 > Ahg496835 jgi|Araly1|496835|fgenesh2_kg.8__2651__AT5G67600.1 Length=442 Score = 571 bits (309), Expect = 2e-162 Identities = 417/463 (90%), Gaps = 32/463 (7%) Strand=Plus/Plus Query 1 ACCGGCATAGCTTCGTTATAAAGGAAAGGAACAGAGTTTGCTTTTAAACaaagagagaaa 60 ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 1 ACCGGCATAGCTTCGCTATAAAGGAAAGAAACAGAGTTTGC--TTAAACAAAGAGATAAA 58 Query 61 gaaaaaaaagctcaaagaactc---ag-a-a-g-aagaagaaagaTGTATCATCAAGAAC 113 ||||||||| |||||||||||| || | | | |||||||||||||||||||||||||| Sbjct 59 GAAAAAAAAACTCAAAGAACTCAAAAGAAGAGGAAAGAAGAAAGATGTATCATCAAGAAC 118 Query 114 AACATCCTGTCGGTGCTCCTCCTCCCCAAGGGTATCCACCTAAGGACGGTTATCCTCCGG 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 AACATCCTGTCGGTGCTCCTCCTCCCCAAGGGTATCCACCTAAGGACGGTTATCCTCCGG 178 Query 174 CCGGTTATCCTCCAGCCGGTTATCCACCGCCAGGATATGCTCAGGGATACCCTGCACAAG 233 ||||||||||| || | ||| ||||| ||||||||||||||||| |||| Sbjct 179 CCGGTTATCCT----CC-G-------CCG---GGATACGCTCAGGGATACCCTGCTCAAG 223 Query 234 GTTATCCTCCGCCGCAGTACTCTCAAGCTCCGCAGCAGAAGCAAAACGCCGGTATGCTTG 293 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 GTTATCCTCCGCCGCAATACTCTCAAGCTCCGCAGCAGAAGCAAAACGCCGGTATGCTTG 283 Query 294 AAGGATGTTTGGCTGCGCTCTGTTGTTGCTGTCTCTTGGATGCATGTTTCTGATCGGAGG 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 284 AAGGATGTTTGGCTGCGCTCTGTTGTTGCTGTCTCTTGGATGCATGTTTCTGATGGGAGG 343 Query 354 ATAATTATA--TACGTTGCCTCAGTCAACT-TT-TATTTCCTCATATATGTTATGTAATG 409 || || ||| | ||||||||||||||| || |||||| |||||||| |||||||| Sbjct 344 ATGATGATACGTT-GTTGCCTCAGTCAACGATTCTATTTC---ATATATGTAATGTAATG 399 Query 410 TTCAACAATCTTTCTTCTGTTGTTATCTTCTTTCAATTCGAAT 452 ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 400 TTCAACAATCTCTCTTCTGTTGTTATCTTCTTTCAATTCGAAT 442 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19344883623 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5