BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67610.2
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496834 jgi|Araly1|496834|fgenesh2_kg.8__2650__AT5G67610.2 2409 0.0
> Ahg496834 jgi|Araly1|496834|fgenesh2_kg.8__2650__AT5G67610.2
Length=1736
Score = 2409 bits (1304), Expect = 0.0
Identities = 1532/1639 (93%), Gaps = 28/1639 (2%)
Strand=Plus/Plus
Query 166 GTTGTGGGAGAAAGC-GGAGAGCTTCAAGTGACTCCTAGTTTAGAGGTAAAAGGTTCTCC 224
||||||||||||| | |||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 116 GTTGTGGGAGAAA-CTGGAGAGCTTCAAGTGACTCCTAATTTAGAGGTTAAGGGTTCTCC 174
Query 225 TGGATTGAAGCCAGATAGAAC-CTCTCTTTGTGAGAGGATTCATATCCATGGACTTGGAA 283
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 175 TGGATTGAAGCCAGATAGAACAGT-TCTTTGTGAGAGGATTCATATCCATGGACTTCGAA 233
Query 284 GGTTTAAACATCTAGACAAGTATGCACATTCGCTCAAGTTGATAGTTAACGCGTCAATC- 342
||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 234 GGTTTAAGCATATAGACAAGTATGCACATTCACTCAAGTTGGTAGTTAACGCGTCAACCG 293
Query 343 TCTGGGAAAACAAATAACATTGACGTTTGCTTTCACCGGAATTTGTCGCGTGGAATTGGA 402
| ||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 294 T-TGGGAAAACAAGCAGCATTGACGTTTGCTTCCACCGGAATTTGTCGCGTGCAATTGGA 352
Query 403 ATGTGCCCTCATAGTCGATGGGAGAAAGCCTCTAAAGGTTCATGGGTTCAGACAATGTCA 462
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 353 ATGTGCCCTCATAGTCGGTGGGAGAAAGCCTCTAAGGGTTCATGGGTTCAGACAATGTCA 412
Query 463 CCCTTCGACCATAAAATCCTTGATGTTAGAGTACCTAGCTCTAACAAGGTCTCATTGGAA 522
||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 413 CCCTTCGACCACAAAATCCTTGATGTTAGAGTAGCTAGCTCTAACAAGGTCACTTTGGAA 472
Query 523 GTGTCTGCTGTAGAAGAATTATTTATGCATCGCATAGTATTCTTACTCCTTGGTGCTGTA 582
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 473 ATGTCTGCTGTAGAAGAATTATTTATGTATCGCATAGTATTCTTAATCCTTGGTGCTGTA 532
Query 583 TTACTGGCTTCGGCTTCTACACTGAGCCAATCTTTAGCGTTTTACTACAGTAGTGCAATG 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 533 TTACTGGCTTCGGCTTCTACACTGAGCCAATCTTTAGCGTTTTACTACAGTAGTGCCATG 592
Query 643 GCTGTTGGTATTATCCTTGTCGTGCTGCTTGTTCTCTTTCAGGGAATGAAGCTTCTACCT 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGTTGGTATTATCCTTGTCGTGCTGCTTGTTCTCTTTCAGGGAATGAAGCTTCTACCA 652
Query 703 ACTGGACGGAGTTCGTTTGCATTGTTCATATACTCAACCCTGCTTGGTTTGGGTGGTTTT 762
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 653 ACTGGACGGAGTTCATTTGCATTGTTCATTTACTCATCCCTGCTTGGTTTGGGTGGTTTT 712
Query 763 CTTCTTCGCTACTTACCCGGATTGTTTGAAAGTCTGCTAACAGAGATGGGAATCGACGAA 822
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 713 CTTCTTCGCTACATACCTGGATTGTTTCAAAGTCTGCTAACAGAGATGGGAATCGACGAA 772
Query 823 GAAATGTACACACCTGCGGCGATTTTTGTGGGGGCGTTTCTGTCTTTGGGTGGAGCATTT 882
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 773 GAAATGTACACACCTGTATCGATTTTTGTGGGGGCGTTTCTATCTTTGGGTGGAGCATTT 832
Query 883 TTTGGATTTTGGACTGTGAGGAAACTTATTCTGACGGAAGATGGCTCCATTGATGTTAGC 942
|| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 TTCGGATTTTGGACCGTAAGGAAACTTATTCTGACGGAAGATGGCTCCATTGACGTTAGC 892
Query 943 ACATCACTATTTGTTTCTTGGTCCATCCGAATTATGGCTGCTGTTTTGATCCTTCAGAGC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ACATCACTATTTGTTTCTTGGTCCATCCGAATTATGGCTGCTGTTTTGATCCTTCAGAGC 952
Query 1003 TCTGTAGATCCTTTACTTGCTGGAGGAGCCCTGATATCTGTAATTCTTATGTCATCGACT 1062
|| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCCGTTGATCCGCTGCTTGCTGGAGGAGCCCTGATATCTGTAATTCTTATGTCATCGACT 1012
Query 1063 TTAAAGAAGATCACCAGATTGAAGTTCCTTCTACGCTTATTCGAGATTCCATTGAATTTA 1122
||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 1013 TTAAAGAAGATAACCAGACTGAAGTTCCTTCTACTTTTATACGAGATTCCATTGAATTTA 1072
Query 1123 CTGCTAGGAATCTGGGAGGCAATTCGTGATACTGATATACCATCCGTCCCGGGATATCTC 1182
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1073 CTGCTAGGAATCTGGGAGGCAATTCGTGATGCTGATATACCATCCGTCCCAGGATATCTC 1132
Query 1183 CATGACTTTATGCAAAAGAGTCCTGATGCTTCTGGATTTCGCAACCGTGTAACTTCTGCT 1242
||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct 1133 CATGACTTTATGCGAAAGAGTCCTGATGCCTCTCAATTTCGCAACCGTGTTACTTTTGCT 1192
Query 1243 TCTCCATCAGGAGGAATCAACAACGGGATGCGAGAATCTCCACCGTCTGAATCAGATACA 1302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1193 TCTCCATCAGGAGGAATCAACAACGGGATGCGAGAATCTTCACCGTCTGAATCAGATACA 1252
Query 1303 TTTCCTTCCTCTTTCCATAAAACTCCTGAAAGGAGCCAACTAACAAAAGAAGAATGGAAA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTTCCTTCCTCTTTCCATAAAACTCCTGAAAGGAGCCAACTAACAAAAGAAGAATGGAAA 1312
Query 1363 AAGCTCACTAAGGATAGCACGACAAAGGCTGTTCAAGAATTGGTTTCTTCACCCGATTTT 1422
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1313 AAGCTCACTAAGGATAGCACAACAAAGGCCGTTCAAGAATTGGTTTCTTCACCCGATTTT 1372
Query 1423 GGCAAATGGGCAGCAGTTAATGCGGATAGGATCAATGTAACACCAAGAAAAGGATCTTCT 1482
|| |||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 1373 GGAAAATGGGCAGCAGTAAATGCCGATAGGATCAGTGTAACACCAAGAAAAGGGTCTTCT 1432
Query 1483 AGCAAAAACC-AGCCACGGAAATGGATGCGTTGGTTCTGATTTCTGAACCAAGCCGGTTT 1541
|||| ||||| | |||||||||||| |||||||||||||| | ||||||| ||||
Sbjct 1433 AGCACAAACCGA-CCACGGAAATGGCTGCGTTGGTTCTGA------A-CCAAGCCAGTTT 1484
Query 1542 -AAGTTTCATAACGTTTAGAGAGAAAAGGAACTCTTTTGTAGAAAGAGAGAGAGC-CTTT 1599
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1485 TAAGTTTCATACCGTTTAGAGAGAAAATGAACTCTTTTGTAGAAAGAGAGAGAGCTCGT- 1543
Query 1600 GTAGGTAAAGTTGCTTTCTTCTTTTATGACTTG-TTCAGTGTTTTAGCttttttttttGT 1658
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1544 GTAGGTAAAGTTGCTTTCTTCTTTTATGACTTGGTT-AGTGTTTTAGCTTTCTTTTTTGT 1602
Query 1659 GGATGAGACCACGATTTGTTGTAACGATCCTAATTGGGTTTTTAGGTTGCGTCATGTTTG 1718
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1603 TGATGAGACCACGATTTGTTGTAACGATCCTAATTGG-TTTTTAGGTTGTGTCATGTTTG 1661
Query 1719 TGTGTAGACAA---TGCAATGAGCATTCTTTTTCCTTTTATGATCTTGAATGGGTTCAAC 1775
||||||||||| |||||||||| |||||||| || ||| |||| ||||||||| ||
Sbjct 1662 TGTGTAGACAAAAATGCAATGAGCCTTCTTTTT--TT--ATGGTCTTTAATGGGTTCTAC 1717
Query 1776 TTTTCATGGTGATGTGAAT 1794
|||||||||||||||||||
Sbjct 1718 TTTTCATGGTGATGTGAAT 1736
Score = 167 bits (90), Expect = 3e-40
Identities = 106/114 (93%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 15 GAAGAAATCGATGGGTGATTATCGTCTTCTACGAAACTCCGGCGTCGTTATCGGAATAAT 74
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 1 GAAGAAATCGATGGGTGATTATCGTCTTCTCCGAAACTCCGGCGTCGTTGTCGGAATCAT 60
Query 75 CTTGCTACATCTCTTTACTTTCGCCTCTCTTGTTTCATCCGATGAACTTCAGTT 128
|||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||
Sbjct 61 CTTGCTACATCTCTTTGCTTTCGCTTCTCTTGTATCATCCAATGAACTCCAGTT 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5