BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67620.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951452 jgi|Araly1|951452|scaffold_803339.1 870 0.0
> Ahg951452 jgi|Araly1|951452|scaffold_803339.1
Length=583
Score = 870 bits (471), Expect = 0.0
Identities = 551/586 (94%), Gaps = 19/586 (3%)
Strand=Plus/Plus
Query 256 ttttttgcaaaaaaaataaaaaTGGGGAATTGTCAAGCGGCCGAAGCAGCGACGGTTTTG 315
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TTTTTTGC-AAAAAAATAAAAATGGGGAATTGTCAAGCGGCGGAAGCAGCGACGGTTTTG 59
Query 316 ATTCATCACCCGGCGGAGAACAAGGTGGAGAGGATTTACTGGTCAGTGACAGCGAGTGAC 375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATTCATCACCCGGCGGAGAACAAGGTGGAGAGGATTTACTGGTCAGTGACAGCGAGTGAT 119
Query 376 ATCATGAAATCCAATCCTGGTCATTACGTTGCGGTGGTGGTGACGTCACCTACGATGAAG 435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTCATGAAATCCAATCCTGGTCATTACGTTGCGGTGGTGGTGACGTCACCTACGATGAAG 179
Query 436 AACGAGAAAGGTTTGCCACTGAAGCAGCTTAAACTCCTTCGTCCTGACGACACTTTACTC 495
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACGAGAAAGGATCGCCATTGAAGCAGCTTAAACTCCTTCGTCCTGACGACACTTTACTC 239
Query 496 ATCGGACATGTCTATCGTCTCGTCAGCTTCGAAGAGGTTTTGAACGAGTTTGCGACGAAG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCGGACATGTCTATCGTCTCGTCAGCTTCGAAGAGGTTTTGAACGAGTTTGCGACGAAG 299
Query 556 AAATGTGTGAAGCTTGGCAAGTTATTGAAAGAAGGAGGAGGGCTTGACTTGACGAAGAAG 615
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGTGTGTGAAGCTTGGGAAGTTATTGAAAGAAGGAGGAGGGCTTGACTTGACGAAGAAG 359
Query 616 AAGACGAA-A--CACAGGAAGAAGAAGCTGGATCA---GGAAACGGGCAAAGTCAACCCG 669
|||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 360 AAGACGAAGAAACACAGGAAGAAGAAGCTGGATCATCAGGAAACGGGCCGAGTCAACCCG 419
Query 670 AATTCGGATCCGAATCCGAACCAAGATGGCGCTGATAATGCGGTCGCCGGAGAAAACGGG 729
| ||||||| || || ||||| ||| || |||||||||||||||||||||||
Sbjct 420 -----G-ATCCGAA-CC-AA----GATGGAGCTAATGATGCGGTCGCCGGAGAAAACGGG 467
Query 730 GGAGATGGGTTTATGAGGAGGAGCCACGGTGGAGGAAGAGGTGGTGGTGGGTGGAGGCCA 789
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 468 GGAGATGGGTTTATGAGGAGGAGCCACGGTGGAGGAAGAGGTGGCGGTGGGTGGAGGCCA 527
Query 790 GCTTTACACAGCATTCCGGAATTTGGATCCTCATGAGAGCTCTTGA 835
||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 528 GCTTTACACAGCATTCCCGAATTTGGATCCTCATGAGAGATCTTGA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5