BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67630.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496832 jgi|Araly1|496832|fgenesh2_kg.8__2648__AT5G67630.1 2566 0.0
> Ahg496832 jgi|Araly1|496832|fgenesh2_kg.8__2648__AT5G67630.1
Length=1574
Score = 2566 bits (1389), Expect = 0.0
Identities = 1504/1561 (96%), Gaps = 2/1561 (0%)
Strand=Plus/Plus
Query 14 TTTTCTCTAAACCCT-AAAACCTTAACTTTTTGCTCTTCTCCCTCCGCCTCAATCGCACG 72
||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 1 TTTTCTCTAAACCCTAAAAACCTCAACTTTTT-TTCTTCTTCCTCCGCCTCAATCGCACG 59
Query 73 AAGACGATAATCGAATATGGCGGAACTAAAGCTATCAGAGAGTCGGGACTTAACCAGAGT 132
|||||||| |||||||||||||||||| ||| |||||||||||||||| || ||||||||
Sbjct 60 AAGACGATTATCGAATATGGCGGAACTGAAGTTATCAGAGAGTCGGGATTTGACCAGAGT 119
Query 133 CGAGCGAATCGGCGCACACTCACACATCAGAGGACTAGGTCTCGACTCTGCCCTCGAGCC 192
|||||||||||||||||||||||||||| |||| |||||||||||||| || ||||||||
Sbjct 120 CGAGCGAATCGGCGCACACTCACACATCCGAGGGCTAGGTCTCGACTCAGCTCTCGAGCC 179
Query 193 GCGAGCTGTTTCCGAAGGTATGGTCGGTCAAGTGAAGGCGCGTAAAGCCGCCGGTGTAAT 252
||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 ACGAGCCGTCTCCGAAGGAATGGTCGGTCAAGTGAAGGCTCGTAAAGCCGCCGGTGTAAT 239
Query 253 CCTTCAGATGATTAGAGAAGGGAAAATCGCGGGTCGGGCTATTCTAATAGCGGGTCAACC 312
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 CCTTCAGATGATTAGAGAAGGGAAAATCGCGGGTCGGGCTATTCTAATTGCGGGTCAACC 299
Query 313 CGGAACGGGTAAGACAGCGATTGCAATGGGTATGGCGAAATCTCTTGGCTTGGAAACTCC 372
|||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CGGAACAGGTAAGACCGCAATTGCAATGGGTATGGCGAAATCGCTTGGCTTGGAAACTCC 359
Query 373 TTTTGCGATGATTGCAGGAAGTGAAATTTTCTCATTAGAGATGTCAAAGACAGAAGCTTT 432
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TTTTGCGATGATTGCAGGAAGTGAGATTTTCTCATTAGAGATGTCAAAGACAGAAGCTTT 419
Query 433 GACTCAGTCTTTTCGTAAAGCGATTGGTGTTAGGATCAAAGAAGAGACAGAGGTTATTGA 492
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GACTCAGTCTTTTCGTAAAGCGATTGGTGTTAGGATCAAAGAAGAGACTGAGGTTATTGA 479
Query 493 AGGAGAAGTTGTTGAGGTTCAGATTGATAGGCCTGCTTCTTCTGGTGTTGCTTCCAAGTC 552
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 AGGAGAAGTTGTGGAGGTTCAGATTGATAGGCCTGCTTCTTCTGGTGTTGCTTCGAAGTC 539
Query 553 AGGGAAGATGACTATGAAAACGACTGATATGGAAACTGTGTATGATATGGGAGCTAAGAT 612
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TGGGAAGATGACTATGAAGACGACGGATATGGAAACTGTGTATGATATGGGAGCTAAGAT 599
Query 613 GATTGAGGCTTTGAACAAGGAGAAAGTGCAGAGTGGTGATGTTATTGCCATTGATAAAGC 672
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 600 GATTGAGGCTTTGAACAAGGAGAAAGTTCAGAGTGGTGATGTTATTGCCATTGATAAGGC 659
Query 673 TACTGGGAAGATTACTAAGCTTGGAAGATCGTTTTCGAGGTCTCGTGATTATGATGCTAT 732
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TACTGGGAAGATTACTAAGCTTGGAAGATCGTTTTCGAGGTCTCGAGATTATGATGCTAT 719
Query 733 GGGTGCGCAGACCAAGTTTGTGCAGTGCCCTGAAGGTGAGTTGCAGAAGAGGAAAGAGGT 792
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GGGTGCGCAGACTAAGTTTGTGCAGTGTCCTGAAGGTGAGTTGCAGAAGAGGAAAGAGGT 779
Query 793 TGTACATTGTGTCACTCTTCACGAGATTGATGTTATCAACAGCAGGACACAAGGGTTTCT 852
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 TGTACATTGTGTGACACTTCACGAGATTGACGTTATCAACAGCAGGACACAAGGGTTTCT 839
Query 853 TGCCCTTTTCACTGGCGATACTGGAGAAATCCGATCAGAAGTCCGGGAACAAATTGATAC 912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGCCCTTTTCACTGGCGATACTGGAGAAATCCGATCAGAAGTCCGGGAACAAATTGATAC 899
Query 913 AAAAGTAGCTGAATGGAGAGAAGAAGGAAAAGCAGAGATAGTTCCCGGAGTTCTCTTCAT 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAAAGTAGCTGAATGGAGAGAAGAAGGAAAAGCAGAGATAGTTCCCGGAGTTCTCTTCAT 959
Query 973 TGATGAAGTCCACATGCTCGACATCGAATGCTTCTCATTCCTTAACCGAGCTCTAGAAAA 1032
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 960 TGATGAAGTCCACATGCTAGACATTGAATGCTTCTCATTCCTTAACCGAGCTCTCGAAAA 1019
Query 1033 CGAAATGTCACCAATCCTTGTGGTGGCAACAAACCGAGGAGTGACGACAATCCGTGGCAC 1092
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CGAAATGTCACCAATCCTCGTGGTGGCAACAAACCGAGGAGTGACGACAATCCGTGGCAC 1079
Query 1093 AAACCAGAAATCACCACACGGGATCCCGATTGATCTCCTTGACCGTCTTCTCATCATCAC 1152
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AAACCAGAAATCACCCCACGGGATCCCGATCGATCTCCTTGACCGTCTTCTCATCATCAC 1139
Query 1153 TACCCAACCTTACACAGACGATGACATAAGGAAGATATTAGAAATCCGTTGCCAAGAGGA 1212
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1140 TACCCAACCTTACACAGACGATGACATAAGGAAGATCTTAGAAATCCGTTGCCAAGAAGA 1199
Query 1213 AGACGTTGAGATGAACGAAGAGGCCAAACAGCTTTTGACATTGATCGGACGTGATACATC 1272
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 AGACGTTGAGATGAACGAAGAGGCAAAACAGCTTTTGACATTGATCGGACGTGATACATC 1259
Query 1273 TCTAAGGTATGCGATTCATCTTATAACCGCAGCTGCATTGTCATGCCAGAAACGGAAAGG 1332
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1260 TCTAAGGTATGCGATTCATCTTATAACCGCGGCTGCATTGTCATGCCAGAAACGTAAAGG 1319
Query 1333 GAAAGTCGTGGAGGTTGAGGATATTCAGAGAGTTTACAGACTGTTCTTGGATGTGAGGAG 1392
||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1320 GAAAGTCGTGGAGGTGGAGGATATTGAGAGAGTTTACCGACTGTTCTTGGATGTGAGGAG 1379
Query 1393 ATCGATGCAGTATCTTGTTGAGTATCAGAGTCAGTATATGTTCAGTGAACCAATCAAAAA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATCGATGCAGTATCTTGTTGAGTATCAGAGTCAGTATATGTTCAGTGAACCAATCAAAAA 1439
Query 1453 CGATGAAGCTGCTGCAGAAGACGAACAAGATGCTATGCAGATCTGAGGATCCACCTCTGT 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1440 CGATGAAGCTGCTGCAGAAGACGAACAAGATGCTATGCAGATCTGAGGATCCATCTCTGT 1499
Query 1513 TTGCCTTATTTATCATGTTTCGTGGTGATATGTATGATTAGGATGTTGAACTCGGATTTA 1572
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1500 TTGCCTTATTTATTATGTTTCGTGATGATATGTATGATTAGGATGTTGAACTCGGATTTA 1559
Query 1573 T 1573
|
Sbjct 1560 T 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5