BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G67640.1

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332808 jgi|Araly1|332808|fgenesh1_pm.C_scaffold_8002151           527    4e-149


> Ahg332808 jgi|Araly1|332808|fgenesh1_pm.C_scaffold_8002151
Length=540

 Score =  527 bits (285),  Expect = 4e-149
 Identities = 396/446 (89%), Gaps = 21/446 (5%)
 Strand=Plus/Plus

Query  94   ATGCGACGGCGAGAAGAAAAGCGTCGAGAATTTCACGAAGCTCTTCTTCAAACACTGTAT  153
            ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGCGCCGGCGAGAAGAAAAGCGTCGAGAGTTTCACGAAGCTCTTCTTCAAACACTGTAT  60

Query  154  CCTCCTTCATCGCCACCTTCTTCTCCTTCCTATTCTCCGCCTCCGGTGGAGGTTGTTGAT  213
            ||| |  | |  || |||||   | |  || |    ||| ||||||||||||||||||||
Sbjct  61   CCT-C--C-T--CCTCCTTC--AT-C-GCC-A----CCGTCTCCGGTGGAGGTTGTTGAT  105

Query  214  AACGAACCATTCGATGTGTCACTCATAAACCCAGAGGATTACTTGAAAATCGATTCATCT  273
             ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| 
Sbjct  106  GACGAACCATTCGATGTGACACTCATAAACCCAGAAGATTACTTGAAAATCGATTCATCG  165

Query  274  AATCACGGAGAAGACAAAGAAATCGGAGACGAATT-GGGGATTGCAGAGAAACAGAGTCG  332
            |||||||| || | ||| ||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct  166  AATCACGGGGACGTCAACGAAATCGGAGACG-ATTCGGGGATTGCAGAGAAACCGAGTCG  224

Query  333  AGCGCAGAGAAAGAGGTTAAGGAAGAAGATGCTCAAAGAGGAAGCAGCTCGACGGAAGAA  392
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  225  AGCGAAGAGAAAGAGGTTAAGGAAGAAGATGCTCAAAGAGGAAGCAGCTCGACGGAAGAA  284

Query  393  AGTCATCGGACCTTTACTTCCGACTGAAATGCTTCAGACCCATGATGAAAGAAGTGTCGG  452
            |||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||
Sbjct  285  AGTCATCGGACCTTTACTTCCGACAGAAATGCTTCAGACCCATGATGGAATAAGAGTCGG  344

Query  453  AGATGCTTGTGGGAGCAA-TGTTGAAGAAGAAGATTCTGACGGTGGCGAAGAAGAGGTT-  510
            ||||||| |||||||||| | ||||||||||||||||||| || | |||||||||   | 
Sbjct  345  AGATGCTGGTGGGAGCAACT-TTGAAGAAGAAGATTCTGATGGAGACGAAGAAGAAACTA  403

Query  511  GATGGGAGCATTAGCAACATATGCTC  536
            | ||||||||||||| |||| |||||
Sbjct  404  G-TGGGAGCATTAGCGACATCTGCTC  428


 Score =  135 bits (73),  Expect = 3e-31
 Identities = 89/96 (93%), Gaps = 3/96 (3%)
 Strand=Plus/Plus

Query  579  AATCGGTGACAATGATAAGACGAGAAAAGTCAAGAAGAGAAGAAATGCTAAGAAACTGGC  638
            ||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct  441  AATCGATGACAATGATAAGACGAGAAAAGTCAAGAAGAGAAGAGAGGCAAAGAAACTGGC  500

Query  639  CAAAGAGAGTTCTAAGAATATCCAGGATGGATCCAA  674
            |||||||||||||||   ||||||||||||||||||
Sbjct  501  CAAAGAGAGTTCTAA---TATCCAGGATGGATCCAA  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25694846058


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5