BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00020.1

Length=1062
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925497 jgi|Araly1|925497|scaffold_201058.1                        516    1e-145
  Ahg887449 jgi|Araly1|887449|Al_scaffold_0096_3                       324    1e-87 


> Ahg925497 jgi|Araly1|925497|scaffold_201058.1
Length=400

 Score =  516 bits (279),  Expect = 1e-145
 Identities = 290/295 (98%), Gaps = 1/295 (0%)
 Strand=Plus/Plus

Query  1    ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  48   ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGG  107

Query  61   ATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACC  120
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  108  ATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACC  167

Query  121  TTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATT  180
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  168  TTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATT  227

Query  181  GATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  GATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGT  287

Query  241  GCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAG  295
            ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct  288  GCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGG-AAG  341


> Ahg887449 jgi|Araly1|887449|Al_scaffold_0096_3
Length=444

 Score =  324 bits (175),  Expect = 1e-87
 Identities = 175/175 (100%), Gaps = 0/175 (0%)
 Strand=Plus/Plus

Query  877   ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT  936
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT  60

Query  937   GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT  996
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT  120

Query  997   GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTA  1051
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTA  175



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39533464929


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5