BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00020.1 Length=1062 Score E Sequences producing significant alignments: (Bits) Value Ahg925497 jgi|Araly1|925497|scaffold_201058.1 516 1e-145 Ahg887449 jgi|Araly1|887449|Al_scaffold_0096_3 324 1e-87 > Ahg925497 jgi|Araly1|925497|scaffold_201058.1 Length=400 Score = 516 bits (279), Expect = 1e-145 Identities = 290/295 (98%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48 ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGG 107 Query 61 ATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACC 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 ATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACC 167 Query 121 TTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATT 180 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 168 TTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATT 227 Query 181 GATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 GATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGT 287 Query 241 GCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAG 295 ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| Sbjct 288 GCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGG-AAG 341 > Ahg887449 jgi|Araly1|887449|Al_scaffold_0096_3 Length=444 Score = 324 bits (175), Expect = 1e-87 Identities = 175/175 (100%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 877 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT 60 Query 937 GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 120 Query 997 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTA 1051 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTA 175 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39533464929 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5