BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00050.1

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475585 jgi|Araly1|475585|fgenesh2_kg.2__715__ATCG00050.1          390    2e-108


> Ahg475585 jgi|Araly1|475585|fgenesh2_kg.2__715__ATCG00050.1
Length=238

 Score =  390 bits (211),  Expect = 2e-108
 Identities = 229/238 (96%), Gaps = 0/238 (0%)
 Strand=Plus/Plus

Query  1    ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACGAGCCGTTTATCGAATCCTT  60
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  1    ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAATGAGCCGTTTATCGAATCGTT  60

Query  61   GCAATTGATGTTCGATACCGAAGAGAAGGAAGAGATCTTAGTAAGGTGGGTTTTTATGAT  120
            |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   GCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTAGCAAGGTGGGTTTTTATGAT  120

Query  121  CCCATAACTAATCAAACTTTTTTAAACCTTTCTGCTATTCTCGATTTTCTTAAAAAAGGA  180
            || ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct  121  CCGATAACAAATCAAACTTTTTTAAATCTTCCTGCTATTCTCGATTTTCTTAAAAAAGGA  180

Query  181  GCTCAACCAACAAGAACAGCTCATGATATTTCAAAGAAGGCTGGGATTTTTACGGAAT  238
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCTCAACCAACAAGAACAGTTCATGATATTTCAAAGAAGGCTGGGATTTTTACGGAAT  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8286852637


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5