BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00070.1

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925494 jgi|Araly1|925494|scaffold_201055.1                        327    1e-89


> Ahg925494 jgi|Araly1|925494|scaffold_201055.1
Length=523

 Score =  327 bits (177),  Expect = 1e-89
 Identities = 183/186 (98%), Gaps = 0/186 (0%)
 Strand=Plus/Plus

Query  1    ATGCTTAATATATTTAATTTGATCTGTAttttttttaattctacccttttttcaagcact  60
            ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||
Sbjct  318  ATGCTTAATATATTTAATTTGATCTGTATTTGTTTTAATTCCGCCCTTTTTTCAAGCACT  377

Query  61   tttttAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  TTTTTAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATG  437

Query  121  CCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  CCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTT  497

Query  181  CGATAA  186
            ||||||
Sbjct  498  CGATAA  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6224686543


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5