BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00130.1

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475583 jgi|Araly1|475583|fgenesh2_kg.2__713__ATCG00130.1          678    0.0  


> Ahg475583 jgi|Araly1|475583|fgenesh2_kg.2__713__ATCG00130.1
Length=525

 Score =  678 bits (367),  Expect = 0.0
 Identities = 421/444 (95%), Gaps = 16/444 (4%)
 Strand=Plus/Plus

Query  1    ATGAAAAATTTAACCGATTCTTTCGTTTACTTGGGTCACTGGCCATCCGCCGGGAGTTTC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAAATTTAACCGATTCTTTCGTTTACTTGGGTCACTGGCCATCCGCCGGGAGTTTC  60

Query  61   GGATTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGTGTAGTTTTCGGTGTA  120
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   GGATTTAATACCGATATTTTAGCAACAAATCTAATAAATCTAAGTGTAGTTTTCGGTGTA  120

Query  121  TTGATCTTTTTTGGAAAGGGAGTG---------------TTAAATGATTTATTAGATAAC  165
            ||||||||||||||||||||||||               |||||||||||||||||||||
Sbjct  121  TTGATCTTTTTTGGAAAGGGAGTGTATAATCTACTTTCATTAAATGATTTATTAGATAAC  180

Query  166  CGAAAGCAGAGGATATTAAATACTATTCGAAATTCAGAAGAACTGCGTGAAGGAGCTATT  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CGAAAGCAGAGGATATTAAATACTATTCGAAATTCAGAAGAACTGCGTGAAGGAGCTATT  240

Query  226  CAACAATTAGAAAATGCCCGGGCGCGCTTGCGTAACGTAGAAACGGAAGCGGATAAGTTT  285
            ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct  241  CAACAATTAGAAAATGCCCGGGCTCGCTTGCGTAAAGTAGAAACGGAAGCGGATCAGTTT  300

Query  286  CGCGTGAATGGATACTCTGAAATCGAACGAGAAAAATTGAATTTGATTAATTCAACTTAT  345
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct  301  CGCGTGAATGGATACTCTGAAATCGAACGAGAAAAATTAAATTTGATTAATTCAATTTAT  360

Query  346  AAAACTTTGAAACAATTAGAAAATTACAAAAATGAAACCATTCTTTTTGAGCAACAAAGA  405
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  361  AAGACTTTGAAACAATTAGAAAATTACAAAAATGAAACCATTCTTTT-GAGCAACAAAGA  419

Query  406  ACAATTAATCAAGTCCGCGAACGG  429
            ||||||||||||||||||||||||
Sbjct  420  ACAATTAATCAAGTCCGCGAACGG  443


 Score =  148 bits (80),  Expect = 3e-35
 Identities = 82/83 (99%), Gaps = 0/83 (0%)
 Strand=Plus/Plus

Query  473  GTTGTTTGAGTAATGAGTTACATTTACGTACTATTAATGCAAATATTGGGATGTTTGGTA  532
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  GTTGTTTGAGTAACGAGTTACATTTACGTACTATTAATGCAAATATTGGGATGTTTGGTA  502

Query  533  CGATGAAAGAAATAACTGATTAA  555
            |||||||||||||||||||||||
Sbjct  503  CGATGAAAGAAATAACTGATTAA  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20260617759


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5