BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00140.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925489 jgi|Araly1|925489|scaffold_201050.1 449 3e-126
> Ahg925489 jgi|Araly1|925489|scaffold_201050.1
Length=783
Score = 449 bits (243), Expect = 3e-126
Identities = 245/246 (99%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 1 ATGAATCCACTGGTTTCTGCTGCTTCGGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ATGAATCCACTGGTTTCTGCTGCTTCGGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCT 173
Query 61 TCTATTGGACCTGGAGTCGGTCAAGGTACAGCTGCGGGTCAAGCTGTCGAAGGTATCGCG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCGGGTCAAGCTGTCGAAGGTATCGCG 233
Query 121 AGACAACCTGAGGCAGAAGGAAAAATACGAGGTACTTTATTGCTTAGTTTGGCTTTTATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AGACAACCTGAGGCAGAAGGAAAAATACGAGGTACTTTATTGCTTAGTTTGGCTTTTATG 293
Query 181 GAAGCTTTAACAATTTATGGCCTGGTTGTAGCATTAGCGCTTTTATTTGCGAATCCTTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GAAGCTTTAACAATTTATGGCCTGGTTGTAGCATTAGCGCTTTTATTTGCGAATCCTTTT 353
Query 241 GTTTAA 246
||||||
Sbjct 354 GTTTAA 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5