BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00150.1 Length=750 Score E Sequences producing significant alignments: (Bits) Value Ahg925488 jgi|Araly1|925488|scaffold_201049.1 1363 0.0 Ahg947809 jgi|Araly1|947809|scaffold_704038.1 124 7e-28 > Ahg925488 jgi|Araly1|925488|scaffold_201049.1 Length=1071 Score = 1363 bits (738), Expect = 0.0 Identities = 746/750 (99%), Gaps = 0/750 (0%) Strand=Plus/Plus Query 1 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCT 124 Query 61 GGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAA 184 Query 121 GTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAGCGATT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 185 GTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAACGATT 244 Query 181 CGCAATCCACAAACAATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTC 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 CGCAATCCACAAACCATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTC 304 Query 241 ATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 ATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATT 364 Query 301 GGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAA 424 Query 361 ATTATCCAGTTACCTCAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGTT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 ATTATCCAGTTACCTCAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGTT 484 Query 421 GCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATTA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 GCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATTA 544 Query 481 GGGTATTTCAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGAA 540 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 GGGTATTTTAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGAA 604 Query 541 GATTTTACAAAACCCCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGAA 600 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 GATTTTACAAAACCTCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGAA 664 Query 601 TTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTTC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 TTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTTC 724 Query 661 CTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTAT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 CTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTAT 784 Query 721 ATAGGTGAGTCTATGGAAGGTCATCATTAA 750 |||||||||||||||||||||||||||||| Sbjct 785 ATAGGTGAGTCTATGGAAGGTCATCATTAA 814 > Ahg947809 jgi|Araly1|947809|scaffold_704038.1 Length=333 Score = 124 bits (67), Expect = 7e-28 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 678 CGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTATATAGGTGAGTCTATGGA 737 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 241 CGGGATTCAAGCTCTCATTTTTGCCACTTTAGTTGCGGCTTATATATGTGAGTCTATGGA 300 Query 738 AGGTCATCATTAA 750 ||||||||||||| Sbjct 301 AGGTCATCATTAA 313 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27639114825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5