BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00150.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925488 jgi|Araly1|925488|scaffold_201049.1 1363 0.0
Ahg947809 jgi|Araly1|947809|scaffold_704038.1 124 7e-28
> Ahg925488 jgi|Araly1|925488|scaffold_201049.1
Length=1071
Score = 1363 bits (738), Expect = 0.0
Identities = 746/750 (99%), Gaps = 0/750 (0%)
Strand=Plus/Plus
Query 1 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCT 124
Query 61 GGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAA 184
Query 121 GTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAGCGATT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 185 GTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAACGATT 244
Query 181 CGCAATCCACAAACAATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CGCAATCCACAAACCATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTC 304
Query 241 ATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 ATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATT 364
Query 301 GGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAA 424
Query 361 ATTATCCAGTTACCTCAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ATTATCCAGTTACCTCAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGTT 484
Query 421 GCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATTA 544
Query 481 GGGTATTTCAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGAA 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GGGTATTTTAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGAA 604
Query 541 GATTTTACAAAACCCCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGAA 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GATTTTACAAAACCTCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGAA 664
Query 601 TTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTTC 724
Query 661 CTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTAT 784
Query 721 ATAGGTGAGTCTATGGAAGGTCATCATTAA 750
||||||||||||||||||||||||||||||
Sbjct 785 ATAGGTGAGTCTATGGAAGGTCATCATTAA 814
> Ahg947809 jgi|Araly1|947809|scaffold_704038.1
Length=333
Score = 124 bits (67), Expect = 7e-28
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 678 CGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTATATAGGTGAGTCTATGGA 737
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 241 CGGGATTCAAGCTCTCATTTTTGCCACTTTAGTTGCGGCTTATATATGTGAGTCTATGGA 300
Query 738 AGGTCATCATTAA 750
|||||||||||||
Sbjct 301 AGGTCATCATTAA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5