BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00160.1

Length=711
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475579 jgi|Araly1|475579|fgenesh2_kg.2__709__ATCG00160.1          630    3e-180


> Ahg475579 jgi|Araly1|475579|fgenesh2_kg.2__709__ATCG00160.1
Length=678

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 347/350 (99%), Gaps = 0/350 (0%)
 Strand=Plus/Plus

Query  1    ATGACAAAAAGATATTGGAACATCGATTTGGAAGAGATGATGAGAGCAGGAGTTCATTTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACAAAAAGATATTGGAACATCGATTTGGAAGAGATGATGAGAGCAGGAGTTCATTTT  60

Query  61   GGACATGGTACGAGGAAATGGAATCCTAGAATGGCACCTTATATTTCTGCAAAGCGTAAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGACATGGTACGAGGAAATGGAATCCTAGAATGGCACCTTATATTTCTGCAAAGCGTAAA  120

Query  121  GGTATTCATATTATAAATCTGACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGTATTCATATTATAAATCTGACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTA  180

Query  181  GTTTTTGATGCGGCAAGTAGGGGAAAACAATTCTTAATTGTTGGGACAAAAAATAAAGCA  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGGACAAAAAATAAAGCA  240

Query  241  GCTGATTTAGTGTCGCGGGCTGCAATACGGGCTCGGTGTCATTATGTTAATAAAAAATGG  300
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GCCGATTTAGTGTCGCGGGCTGCAATACGGGCTCGGTGTCATTATGTTAATAAAAAATGG  300

Query  301  CTCGGCGGCATGTTAACAAATTGGTCCACTACCGAAAAAAGACTTCATAA  350
            |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  301  CTCGGCGGCATGTTAACAAATTGGTCCACTACAGAAAAAAGACTTCATAA  350


 Score =  590 bits (319),  Expect = 6e-168
 Identities = 326/329 (99%), Gaps = 1/329 (0%)
 Strand=Plus/Plus

Query  383  AGGGATTCAACCGTCTTCCGAAAAGGGATGCAGCTGTGTTGAAGAGACAATTATCTCGCT  442
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  AGGGA-TCAACCGTCTTCCGAAAAGGGATGCAGCTGTGTTGAAGAGACAATTATCTCGCT  409

Query  443  TGGAAACATATCTAGGCGGGATTAAATATATGACGGGATTGCCTGATATTGTAATCATCC  502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  TGGAAACATATCTAGGCGGGATTAAATATATGACGGGATTGCCTGATATTGTAATCATCC  469

Query  503  TCGATCAGCAAGAAGAATATACGGCTCTTAGAGAATGTATCACTTTGGGAATTCCAACCA  562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  470  TCGATCAGCAAGAAGAATATACGGCTCTTAGAGAATGTATCACTTTGGGAATTCCAACCA  529

Query  563  TTTCTTTAATCGATACAAATTGTAATCCCGATCTCGCGGATATTTCTATTCCCGCAAATG  622
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  530  TTTCTTTAATCGATACAAATTGTAATCCCGATCTCGCGGATATTTCTATTCCAGCAAATG  589

Query  623  ATGACGCTATAGCTTCAATTCGATTCATTCTTAACAAATTAGTATTCGCAATTTGTGAGG  682
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  ATGACGCTATAGCTTCAATTCGATTCATTCTTAACAAATTAGTATTCGCAATTTGTGAGG  649

Query  683  GCCGTTCTAGCTATATACAAAATTCTTGA  711
            | |||||||||||||||||||||||||||
Sbjct  650  GTCGTTCTAGCTATATACAAAATTCTTGA  678



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26152321062


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5