BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00220.1

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925483 jgi|Araly1|925483|scaffold_201044.1                        178    6e-45


> Ahg925483 jgi|Araly1|925483|scaffold_201044.1
Length=601

 Score =  178 bits (96),  Expect = 6e-45
 Identities = 102/105 (97%), Gaps = 0/105 (0%)
 Strand=Plus/Minus

Query  1    ATGGAAGTAAATATTCTTGCATTTATTGCTACTGCACTCTTCATTCTCGTTCCTACTGCT  60
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  326  ATGGAAGTCAATATTCTTGCATTTATTGCTACCGCACTCTTCATTCTCGTTCCTACTGCT  267

Query  61   TTTTTGCTTATAATTTACGTAAAAACCGTTAGTCAAAATGATTAA  105
            ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  266  TTTTTGCTTATAATTTACGTAAAAACCATTAGTCAAAATGATTAA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3172337439


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5