BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00270.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315523 jgi|Araly1|315523|fgenesh1_pm.C_scaffold_2000556 1956 0.0
Ahg475593 jgi|Araly1|475593|fgenesh2_kg.2__723__ATCG00270.1 1947 0.0
Ahg925952 jgi|Araly1|925952|scaffold_201513.1 1181 0.0
Ahg925953 jgi|Araly1|925953|scaffold_201514.1 132 6e-30
Ahg475572 jgi|Araly1|475572|fgenesh2_kg.2__702__ATCG00280.1 99.0 6e-20
Ahg315545 jgi|Araly1|315545|fgenesh1_pm.C_scaffold_2000578 99.0 6e-20
> Ahg315523 jgi|Araly1|315523|fgenesh1_pm.C_scaffold_2000556
Length=1062
Score = 1956 bits (1059), Expect = 0.0
Identities = 1061/1062 (99%), Gaps = 0/1062 (0%)
Strand=Plus/Plus
Query 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
Query 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
Query 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
Query 181 ACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCT 240
Query 241 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGA 300
Query 301 GATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCT 360
Query 361 TTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGA 420
Query 421 CCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATT 480
Query 481 TATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTT 540
Query 541 CGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 600
Query 601 GGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAA 660
Query 661 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAA 720
Query 721 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTT 780
Query 781 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTA 840
Query 841 TGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTTCGTT 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 TGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTT 900
Query 901 TCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATT 960
Query 961 CTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 1020
Query 1021 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 1062
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 1062
> Ahg475593 jgi|Araly1|475593|fgenesh2_kg.2__723__ATCG00270.1
Length=1060
Score = 1947 bits (1054), Expect = 0.0
Identities = 1058/1060 (99%), Gaps = 0/1060 (0%)
Strand=Plus/Plus
Query 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
Query 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
Query 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
Query 181 ACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCT 240
Query 241 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGA 300
Query 301 GATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCT 360
Query 361 TTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGA 420
Query 421 CCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATT 480
Query 481 TATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTT 540
Query 541 CGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 600
Query 601 GGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAA 660
Query 661 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAA 720
Query 721 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTT 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GCCGAAGAAACTTATTCAATGGTCACCGCTAACAGCTTTTGGTCACAAATCTTTGGGGTT 780
Query 781 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTA 840
Query 841 TGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTTCGTT 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 TGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTT 900
Query 901 TCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATT 960
Query 961 CTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 1020
Query 1021 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 1060
||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 1060
> Ahg925952 jgi|Araly1|925952|scaffold_201513.1
Length=903
Score = 1181 bits (639), Expect = 0.0
Identities = 649/654 (99%), Gaps = 0/654 (0%)
Strand=Plus/Plus
Query 275 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTAT 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTAT 309
Query 335 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 369
Query 395 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTG 454
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 370 AACTTGCTCGATCTGTTCAATTGCGACCATATAATGCAATCGCATTCTCTGGTCCCATTG 429
Query 455 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 489
Query 515 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 549
Query 575 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 634
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 550 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTTGGCGCGGCTCTGCTAT 609
Query 635 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATA 694
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GCGCTATTCATGTTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATA 669
Query 695 CATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACC 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACC 729
Query 755 GCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTA 789
Query 815 TGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTT 874
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 790 TGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTT 849
Query 875 TGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATC 928
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 850 TGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATC 903
Score = 355 bits (192), Expect = 3e-97
Identities = 192/192 (100%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 98
Query 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 158
Query 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 218
Query 181 ACTCATGGATTG 192
||||||||||||
Sbjct 219 ACTCATGGATTG 230
> Ahg925953 jgi|Araly1|925953|scaffold_201514.1
Length=1276
Score = 132 bits (71), Expect = 6e-30
Identities = 71/71 (100%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 992 CGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAA 62
Query 1052 ACGCTCTTTAA 1062
|||||||||||
Sbjct 63 ACGCTCTTTAA 73
> Ahg475572 jgi|Araly1|475572|fgenesh2_kg.2__702__ATCG00280.1
Length=1420
Score = 99.0 bits (53), Expect = 6e-20
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1010 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 53
> Ahg315545 jgi|Araly1|315545|fgenesh1_pm.C_scaffold_2000578
Length=1422
Score = 99.0 bits (53), Expect = 6e-20
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1010 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5