BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00300.1
Length=189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925532 jgi|Araly1|925532|scaffold_201093.1 339 5e-93
Ahg907883 jgi|Araly1|907883|Al_scaffold_0002_964 339 5e-93
Ahg908261 jgi|Araly1|908261|Al_scaffold_0002_1342 279 3e-75
> Ahg925532 jgi|Araly1|925532|scaffold_201093.1
Length=229
Score = 339 bits (183), Expect = 5e-93
Identities = 187/189 (99%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1 ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 80
Query 61 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTT 140
Query 121 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 200
Query 181 ATCTCTTGA 189
|||||||||
Sbjct 201 ATCTCTTGA 209
> Ahg907883 jgi|Araly1|907883|Al_scaffold_0002_964
Length=231
Score = 339 bits (183), Expect = 5e-93
Identities = 187/189 (99%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1 ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 43 ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 102
Query 61 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTT 162
Query 121 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 222
Query 181 ATCTCTTGA 189
|||||||||
Sbjct 223 ATCTCTTGA 231
> Ahg908261 jgi|Araly1|908261|Al_scaffold_0002_1342
Length=213
Score = 279 bits (151), Expect = 3e-75
Identities = 167/174 (96%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 1 ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 43 ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTA-TG 101
Query 61 -ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGT 119
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 102 CATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGA--AACAAAAATGTTGT 159
Query 120 ATTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAA 173
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TTTTTCTTGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAA 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 6339251326
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5